|
Filename: .cvsignore | |||
| Revision 1.2 | tangorn | 2004-10-05 20:03:09 | None |
|
Added DEPDIRS to cvsignores; Changed trajectory file output to only write when the coordinate changes; Rewrote place field display for new optimized input, it also handles old full input; Replaced deprecated repaintNoErase with noAutoErase; Supposedly fixed progress bar for small network loading. | |||
| Revision 1.1 | tangorn | 2003-03-23 23:22:14 | None |
|
Initial revision | |||
| Revision 1.1.1.1 | tangorn | 2003-03-23 23:22:14 | None |
|
Resurrection of CVS server for KInNeSS | |||
|
Filename: Makefile.am | |||
| Revision 1.9 | tangorn | 2008-06-05 12:43:34 | None |
|
Interface for weights and axonal delays modified for better handling of external files | |||
| Revision 1.8 | tangorn | 2005-12-20 14:55:37 | None |
|
Fixed crash on gate resizing | |||
| Revision 1.7 | tangorn | 2005-03-08 09:10:19 | None |
|
New synapses are now fully ready for testing | |||
| Revision 1.6 | tangorn | 2004-12-26 11:36:14 | None |
|
Moved the basic image display to libkinprefs, so it can be used by any part or plugin | |||
| Revision 1.5 | tangorn | 2004-12-24 12:16:15 | None |
|
This is reasonably correct version of LFP and CSD plotting, still a lot to work on | |||
| Revision 1.4 | tangorn | 2004-01-11 04:54:36 | None |
|
Added the shell for generic project environment with mutiple inputs that vary through time | |||
| Revision 1.3 | tangorn | 2004-01-03 15:03:47 | None |
|
Fix for non-standard SANNDRA installation | |||
| Revision 1.2 | tangorn | 2003-07-28 12:23:17 | None |
|
Updated documentation; Changed status bar operation; Added progress bar; Weights are not any longer reloaded on reset if the network or environment changed; Populations are no longer recreated if edited; Error messages updated for more understandability; Switched leakage to inverted gate in standard channel; Changed leakage conductance units to pS; Changed item correction editor to load specific page with error; Added weight bounds and reduced learning rate 10 times; Set default salience to 100; Changed gate pages to static to speed up editor loading; Made network description static; Updated default channel and neuron files. | |||
| Revision 1.1 | tangorn | 2003-03-23 23:22:14 | None |
|
Initial revision | |||
| Revision 1.1.1.1 | tangorn | 2003-03-23 23:22:14 | None |
|
Resurrection of CVS server for KInNeSS | |||
|
Filename: kbrainfactory.cpp | |||
| Revision 1.2 | tangorn | 2007-11-09 10:10:34 | None |
|
Fixed e-mail | |||
| Revision 1.1 | tangorn | 2003-03-23 23:22:14 | None |
|
Initial revision | |||
| Revision 1.1.1.1 | tangorn | 2003-03-23 23:22:14 | None |
|
Resurrection of CVS server for KInNeSS | |||
|
Filename: kbrainfactory.h | |||
| Revision 1.2 | tangorn | 2007-11-09 10:10:34 | None |
|
Fixed e-mail | |||
| Revision 1.1 | tangorn | 2003-03-23 23:22:14 | None |
|
Initial revision | |||
| Revision 1.1.1.1 | tangorn | 2003-03-23 23:22:14 | None |
|
Resurrection of CVS server for KInNeSS | |||
|
Filename: kbrainplugin.cpp | |||
| Revision 1.44 | tangorn | 2008-06-10 05:50:23 | None |
|
Removed global weight loading from interface | |||
| Revision 1.43 | tangorn | 2007-11-30 12:28:23 | None |
|
Adaptation for new weights and delays, unstable | |||
| Revision 1.42 | tangorn | 2007-11-09 10:10:34 | None |
|
Fixed e-mail | |||
| Revision 1.41 | tangorn | 2005-09-30 08:24:56 | None |
|
Changed code to compile with gcc-3.4.4. Partially implemented new address scaling functionality | |||
| Revision 1.40 | tangorn | 2005-08-25 17:19:51 | None |
|
Update of the user manual, still incomplete; New input protocol editor, still buggy if used with navigation environment, should be fine with generic | |||
| Revision 1.39 | tangorn | 2005-04-04 11:35:33 | None |
|
Fix for input protocol not loading on first run | |||
| Revision 1.38 | tangorn | 2005-03-08 21:27:45 | None |
|
Changed trajectory recording to C file I/O for speed, corrected TSC readings in Qt speed adjustment | |||
| Revision 1.37 | tangorn | 2005-01-16 11:30:38 | None |
|
Introduced input protocols | |||
| Revision 1.36 | tangorn | 2004-12-25 15:15:16 | None |
|
A fix for trajectory file not being flushed properly | |||
| Revision 1.35 | tangorn | 2004-12-24 15:48:26 | None |
|
Now LFP and CSD plotting is available for generic environment | |||
| Revision 1.34 | tangorn | 2004-12-24 12:16:15 | None |
|
This is reasonably correct version of LFP and CSD plotting, still a lot to work on | |||
| Revision 1.33 | tangorn | 2004-10-18 07:47:43 | None |
|
This should fix compillation problem for Qt < 3.3 and KDE < 3.2; Also added our specific mime type for NeuroML (*.nml), can load both old (*.xml) and new extensions, saves as new ones... | |||
| Revision 1.32 | tangorn | 2004-10-09 03:32:56 | None |
|
Made random reward restocking an option. This lifts the warning set in Oct 1st commit, all new features are now configurable instead of hardcoded. Also added grayscale display option for population activity display and ability to save the picture of activity at any moment | |||
| Revision 1.31 | tangorn | 2004-10-05 20:03:09 | None |
|
Added DEPDIRS to cvsignores; Changed trajectory file output to only write when the coordinate changes; Rewrote place field display for new optimized input, it also handles old full input; Replaced deprecated repaintNoErase with noAutoErase; Supposedly fixed progress bar for small network loading. | |||
| Revision 1.30 | tangorn | 2004-09-30 21:10:08 | None |
|
WARNING! This commit brings in some stuff that makes navigational environment to behave in unusual fasion. It is not intended for users, I just need to transfer these files on other machine. They will be either removed or corrected later. | |||
| Revision 1.29 | tangorn | 2004-09-23 19:20:07 | None |
|
Minor fixes of the interface | |||
| Revision 1.28 | tangorn | 2004-05-28 16:42:19 | None |
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Finalized new NeuroML tags parsing, backward compatible, can read old, new, or mixed format; saves in new. Stable. | |||
| Revision 1.27 | tangorn | 2004-05-06 16:03:57 | None |
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Fixed the reset. Added a lot of standard shortcuts and their descriptions in the manual. Made the trajectory recording optional. | |||
| Revision 1.26 | tangorn | 2004-04-18 19:45:34 | None |
|
SANNDRA API slightly changed, corresponding fixes. | |||
| Revision 1.25 | tangorn | 2004-04-05 11:11:42 | None |
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First take on place field display | |||
| Revision 1.24 | tangorn | 2004-04-04 15:39:12 | None |
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Added trajectory saving in trajectory.dat | |||
| Revision 1.23 | tangorn | 2004-03-30 19:56:20 | None |
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Adding the fourth input channel: generic part handles it in the input editor and display; not enabled in the network editor yet. Maze part handles it as a direct command to move the animal to a clicked destination, later it will be done through cell activity. Changed: animal speed now is less dependent on the traveling distance to destination. Fixed: If the speed is not measured yet (or is never measured), the movement will be done slowly (as if you have 1GHz processor), but realistically. | |||
| Revision 1.22 | tangorn | 2004-02-09 20:29:23 | None |
|
Fixing the spike generation; Partial interface for gap junctions; All voltage gated channels now should have V0 relative to Vrest, the default channels are fixed accordingly. | |||
| Revision 1.21 | tangorn | 2004-01-29 10:15:05 | None |
|
More critical bugfixes | |||
| Revision 1.20 | tangorn | 2004-01-29 00:59:25 | None |
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New way of handling progress bar | |||
| Revision 1.19 | tangorn | 2004-01-12 14:17:31 | None |
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Fixed enabling run inappropriately | |||
| Revision 1.18 | tangorn | 2004-01-10 19:31:33 | None |
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Updated copyright information, also added Id tags to files changed in 2004 | |||
| Revision 1.17 | tangorn | 2004-01-09 16:27:30 | None |
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Fixed crash when switching back and forth between projects | |||
| Revision 1.16 | tangorn | 2004-01-03 13:39:37 | None |
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Fixed disabling run if new environment created without a rat; added setting the reduced equation to generate APs | |||
| Revision 1.15 | tangorn | 2003-12-29 04:21:48 | None |
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Minor fixes of the graphics; fixed session management bug on KDE restore; set threshold in learning rule to threshold in reduced equation. | |||
| Revision 1.14 | tangorn | 2003-12-18 12:43:43 | None |
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Added a bit of session management; Fixed wrong starting path in weight save/load dialog; Fixed statusbar not showing temporary messages. | |||
| Revision 1.13 | tangorn | 2003-12-17 16:03:39 | None |
|
Fixed the progress bar not moving if autoupdate is off; hack added to reduce the speed by 10% after rat moves into new location | |||
| Revision 1.12 | tangorn | 2003-12-13 11:31:41 | None |
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Conditional compillation for performance measure on TSC processors | |||
| Revision 1.11 | tangorn | 2003-12-11 16:05:49 | None |
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Simplified Qt performance check | |||
| Revision 1.10 | tangorn | 2003-12-11 12:01:48 | None |
|
Continue to build autocorrection of animation speed | |||
| Revision 1.9 | tangorn | 2003-12-10 14:48:09 | None |
|
Attempt to control animation speed through measuring of the simulation performance | |||
| Revision 1.8 | tangorn | 2003-10-31 07:13:36 | None |
|
Minor fix in setting the passive decay rate for learning; Started adding placefield/synaptic strength display. | |||
| Revision 1.7 | tangorn | 2003-10-26 11:00:03 | None |
|
Separated KInput<T> and children into a file; Minor bugfixes in handling leakage and voltage block gates; Reworked the projection source settings and made possible to use fan input currents. | |||
| Revision 1.6 | tangorn | 2003-09-21 13:26:10 | None |
|
New version of status bar uses stack of messages, so several actions can be performed and displayed correctly. Doxygen settings removed from CVS. | |||
| Revision 1.5 | tangorn | 2003-09-21 11:41:55 | None |
|
Set the progress bar to show progress during simulation run, currently only works if Autoupdate is on and network controls behavior | |||
| Revision 1.4 | tangorn | 2003-08-20 10:53:02 | None |
|
Changed "display" tag to "monitor" for readability; fixed the step size of g_bar widget; fixed resistance->conductance transform for gap junctions. | |||
| Revision 1.3 | tangorn | 2003-07-28 12:23:17 | None |
|
Updated documentation; Changed status bar operation; Added progress bar; Weights are not any longer reloaded on reset if the network or environment changed; Populations are no longer recreated if edited; Error messages updated for more understandability; Switched leakage to inverted gate in standard channel; Changed leakage conductance units to pS; Changed item correction editor to load specific page with error; Added weight bounds and reduced learning rate 10 times; Set default salience to 100; Changed gate pages to static to speed up editor loading; Made network description static; Updated default channel and neuron files. | |||
| Revision 1.2 | tangorn | 2003-07-18 10:57:30 | None |
|
Converted network editor to tree form, made all widgets for currents unified. Fixed the proper timing of reward disappearance. Other minor fixes. | |||
| Revision 1.1 | tangorn | 2003-03-23 23:22:14 | None |
|
Initial revision | |||
| Revision 1.1.1.1 | tangorn | 2003-03-23 23:22:14 | None |
|
Resurrection of CVS server for KInNeSS | |||
|
Filename: kbrainplugin.h | |||
| Revision 1.14 | tangorn | 2008-06-10 05:50:23 | None |
|
Removed global weight loading from interface | |||
| Revision 1.13 | tangorn | 2007-11-09 10:10:34 | None |
|
Fixed e-mail | |||
| Revision 1.12 | tangorn | 2005-09-30 08:24:56 | None |
|
Changed code to compile with gcc-3.4.4. Partially implemented new address scaling functionality | |||
| Revision 1.11 | tangorn | 2005-08-25 17:19:51 | None |
|
Update of the user manual, still incomplete; New input protocol editor, still buggy if used with navigation environment, should be fine with generic | |||
| Revision 1.10 | tangorn | 2005-01-16 11:30:38 | None |
|
Introduced input protocols | |||
| Revision 1.9 | tangorn | 2004-06-26 16:50:30 | None |
|
Minor change in handling preference pages | |||
| Revision 1.8 | tangorn | 2004-03-30 19:56:20 | None |
|
Adding the fourth input channel: generic part handles it in the input editor and display; not enabled in the network editor yet. Maze part handles it as a direct command to move the animal to a clicked destination, later it will be done through cell activity. Changed: animal speed now is less dependent on the traveling distance to destination. Fixed: If the speed is not measured yet (or is never measured), the movement will be done slowly (as if you have 1GHz processor), but realistically. | |||
| Revision 1.7 | tangorn | 2004-02-09 20:29:23 | None |
|
Fixing the spike generation; Partial interface for gap junctions; All voltage gated channels now should have V0 relative to Vrest, the default channels are fixed accordingly. | |||
| Revision 1.6 | tangorn | 2003-12-11 16:05:49 | None |
|
Simplified Qt performance check | |||
| Revision 1.5 | tangorn | 2003-12-11 12:01:48 | None |
|
Continue to build autocorrection of animation speed | |||
| Revision 1.4 | tangorn | 2003-09-21 11:41:56 | None |
|
Set the progress bar to show progress during simulation run, currently only works if Autoupdate is on and network controls behavior | |||
| Revision 1.3 | tangorn | 2003-07-28 12:23:17 | None |
|
Updated documentation; Changed status bar operation; Added progress bar; Weights are not any longer reloaded on reset if the network or environment changed; Populations are no longer recreated if edited; Error messages updated for more understandability; Switched leakage to inverted gate in standard channel; Changed leakage conductance units to pS; Changed item correction editor to load specific page with error; Added weight bounds and reduced learning rate 10 times; Set default salience to 100; Changed gate pages to static to speed up editor loading; Made network description static; Updated default channel and neuron files. | |||
| Revision 1.2 | tangorn | 2003-07-18 10:57:30 | None |
|
Converted network editor to tree form, made all widgets for currents unified. Fixed the proper timing of reward disappearance. Other minor fixes. | |||
| Revision 1.1 | tangorn | 2003-03-23 23:22:14 | None |
|
Initial revision | |||
| Revision 1.1.1.1 | tangorn | 2003-03-23 23:22:14 | None |
|
Resurrection of CVS server for KInNeSS | |||
|
Filename: kfieldpot.cpp | |||
| Revision 1.9 | tangorn | 2007-08-15 19:23:59 | None |
|
Fixed a bug in xml parsing of branched neurons, courtesy of Jasmin Leveille | |||
| Revision 1.8 | tangorn | 2005-05-30 20:43:02 | None |
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Minor fix of the interface for the input current injection | |||
| Revision 1.7 | tangorn | 2005-02-28 00:39:21 | None |
|
Minor adjustments of scaling and event processing for CSD and LFP displays | |||
| Revision 1.6 | tangorn | 2005-02-27 18:09:13 | None |
|
Minor change of LFP calculation to fix the units | |||
| Revision 1.5 | tangorn | 2005-01-08 11:48:02 | None |
|
Couple fixes for LFP and CSD plotting widgets | |||
| Revision 1.4 | tangorn | 2004-12-30 18:14:42 | None |
|
This brings together all types of data visualisation that exist up to date: based on the same classes they exibit similar behaviors like scaling, saving, switching between color and grayscale pallette etc. | |||
| Revision 1.3 | tangorn | 2004-12-28 14:07:47 | None |
|
Added the basic shell for CSD, LFP and PF displays, currently disabled | |||
| Revision 1.2 | tangorn | 2004-12-26 12:08:24 | None |
|
Adapted basic plotter for better inheritance | |||
| Revision 1.1 | tangorn | 2004-12-24 12:16:15 | None |
|
This is reasonably correct version of LFP and CSD plotting, still a lot to work on | |||
|
Filename: kfieldpot.h | |||
| Revision 1.6 | tangorn | 2005-02-28 00:39:21 | None |
|
Minor adjustments of scaling and event processing for CSD and LFP displays | |||
| Revision 1.5 | tangorn | 2005-02-27 18:09:13 | None |
|
Minor change of LFP calculation to fix the units | |||
| Revision 1.4 | tangorn | 2005-01-08 11:48:02 | None |
|
Couple fixes for LFP and CSD plotting widgets | |||
| Revision 1.3 | tangorn | 2004-12-30 18:14:42 | None |
|
This brings together all types of data visualisation that exist up to date: based on the same classes they exibit similar behaviors like scaling, saving, switching between color and grayscale pallette etc. | |||
| Revision 1.2 | tangorn | 2004-12-27 09:07:59 | None |
|
Now the placefield display is also built on image plotter | |||
| Revision 1.1 | tangorn | 2004-12-24 12:16:15 | None |
|
This is reasonably correct version of LFP and CSD plotting, still a lot to work on | |||
|
Filename: kgatesparse.cpp | |||
| Revision 1.9 | tangorn | 2008-06-10 06:04:48 | None |
|
Generating and parsing synaptic weights: New style almost complete. Remaining issue - one-to-one projections are not working properly | |||
| Revision 1.8 | tangorn | 2007-11-30 12:28:23 | None |
|
Adaptation for new weights and delays, unstable | |||
| Revision 1.7 | tangorn | 2007-11-09 10:10:34 | None |
|
Fixed e-mail | |||
| Revision 1.6 | tangorn | 2007-09-06 10:18:40 | None |
|
New handling of weights and axonal delays, THIS IS UNFINISHED | |||
| Revision 1.5 | tangorn | 2007-08-15 19:23:59 | None |
|
Fixed a bug in xml parsing of branched neurons, courtesy of Jasmin Leveille | |||
| Revision 1.4 | tangorn | 2005-12-21 08:10:11 | None |
|
Fixed crash on loading some environments with scaled connectivity | |||
| Revision 1.3 | tangorn | 2005-12-20 19:52:27 | None |
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Fixed crash on switch from scaled to relative. Synapses seem fine, gap junctions seem shifted towards origin | |||
| Revision 1.2 | tangorn | 2005-12-20 18:03:26 | None |
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Almost finished scaled addressing. Might sometimes crash in populations with many links from sources of different sizes | |||
| Revision 1.1 | tangorn | 2005-12-20 14:55:37 | None |
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Fixed crash on gate resizing | |||
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Filename: kinbrain.rc | |||
| Revision 1.4 | tangorn | 2008-06-10 05:50:23 | None |
|
Removed global weight loading from interface | |||
| Revision 1.3 | tangorn | 2004-01-15 16:03:36 | None |
|
Generic part is ready now for Max to start testing; Common code from it and maze part moved to project part | |||
| Revision 1.2 | tangorn | 2003-07-18 10:57:30 | None |
|
Converted network editor to tree form, made all widgets for currents unified. Fixed the proper timing of reward disappearance. Other minor fixes. | |||
| Revision 1.1 | tangorn | 2003-03-23 23:22:14 | None |
|
Initial revision | |||
| Revision 1.1.1.1 | tangorn | 2003-03-23 23:22:14 | None |
|
Resurrection of CVS server for KInNeSS | |||
|
Filename: kinput.h | |||
| Revision 1.18 | tangorn | 2007-11-30 12:28:23 | None |
|
Adaptation for new weights and delays, unstable | |||
| Revision 1.17 | tangorn | 2007-11-09 10:10:34 | None |
|
Fixed e-mail | |||
| Revision 1.16 | tangorn | 2006-09-12 20:20:56 | None |
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Fixed a compatibility issue with newer gcc | |||
| Revision 1.15 | tangorn | 2005-12-16 09:44:24 | None |
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Unstable version using full functionality of scaled addressing | |||
| Revision 1.14 | tangorn | 2005-11-22 07:50:24 | None |
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Preparing fo kernel families in address scaling; Fixed bug that overwrote network file after Network->New menu selection | |||
| Revision 1.13 | tangorn | 2005-09-30 08:24:56 | None |
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Changed code to compile with gcc-3.4.4. Partially implemented new address scaling functionality | |||
| Revision 1.12 | tangorn | 2005-08-30 11:33:05 | None |
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Oops, restoring lost changes | |||
| Revision 1.11 | tangorn | 2005-08-25 17:19:51 | None |
|
Update of the user manual, still incomplete; New input protocol editor, still buggy if used with navigation environment, should be fine with generic | |||
| Revision 1.10 | tangorn | 2005-03-06 07:00:25 | None |
|
Added interface and parsing to handle depleteable transmitters (unfinished) and connection-specific axonal delays. Testing in progress. | |||
| Revision 1.9 | tangorn | 2005-01-16 11:30:38 | None |
|
Introduced input protocols | |||
| Revision 1.8 | tangorn | 2004-05-26 15:40:47 | None |
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Added direct injected current (type "injection"); redid the interface for input voltage (type "input") with backward compatibility check in the network editor. Requires to open and save your old networks by the editor before running. "AHP" dependency is now called "AHP/ADP", also should be backward compatible. Fixed sliders in the SANNDRA preference page. Extended the ranges for time constants up to 300/500 ms. Added a comment editor to the network editor, do not use it yet though, I need to make it NeuroML compliant first. Fixed the compartmental dimensions, note that interface still uses mm as units, but NeuroML description now uses cm, so old networks should be manually corrected. | |||
| Revision 1.7 | tangorn | 2004-04-26 17:06:18 | None |
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Added interface and parsing for the fourth input channel; Fixed a number of interface bugs. | |||
| Revision 1.6 | tangorn | 2004-04-21 10:29:45 | None |
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Final cleaning for the new gating API in SANNDRA | |||
| Revision 1.5 | tangorn | 2004-04-20 13:21:39 | None |
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Fixed one memory leak in the process of following SANNDRA new API | |||
| Revision 1.4 | tangorn | 2004-04-20 06:20:09 | None |
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Corresponds to UNSTABLE SANNDRA commit. | |||
| Revision 1.3 | tangorn | 2004-01-29 10:15:05 | None |
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More critical bugfixes | |||
| Revision 1.2 | tangorn | 2003-11-17 12:48:59 | None |
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Fixed minor bug in gating interface; expanded border handling to three types: extend - no input from outside of the environment, wrap - input from (n+1)-th pixel is equal to input from 1st pixel, expand - input from (n+1)-th pixel is equal to input from n-th pixel. | |||
| Revision 1.1 | tangorn | 2003-10-26 11:00:03 | None |
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Separated KInput<T> and children into a file; Minor bugfixes in handling leakage and voltage block gates; Reworked the projection source settings and made possible to use fan input currents. | |||
|
Filename: klayer.cpp | |||
| Revision 1.46 | tangorn | 2008-06-10 06:04:48 | None |
|
Generating and parsing synaptic weights: New style almost complete. Remaining issue - one-to-one projections are not working properly | |||
| Revision 1.45 | tangorn | 2008-06-05 19:03:40 | None |
|
Finished axonal delays saving/loading. | |||
| Revision 1.44 | tangorn | 2008-06-05 18:28:43 | None |
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Debugging axonal delays loading/saving | |||
| Revision 1.43 | tangorn | 2007-11-30 12:28:23 | None |
|
Adaptation for new weights and delays, unstable | |||
| Revision 1.42 | tangorn | 2007-11-09 10:10:34 | None |
|
Fixed e-mail | |||
| Revision 1.41 | tangorn | 2007-08-29 17:02:17 | None |
|
And one more reversed | |||
| Revision 1.40 | tangorn | 2007-08-29 16:29:44 | None |
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Forgot this file | |||
| Revision 1.39 | tangorn | 2007-08-15 19:23:59 | None |
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Fixed a bug in xml parsing of branched neurons, courtesy of Jasmin Leveille | |||
| Revision 1.38 | tangorn | 2005-12-20 14:55:37 | None |
|
Fixed crash on gate resizing | |||
| Revision 1.37 | tangorn | 2005-12-16 09:44:24 | None |
|
Unstable version using full functionality of scaled addressing | |||
| Revision 1.36 | tangorn | 2005-08-30 11:14:32 | None |
|
Adding scaled adressing | |||
| Revision 1.35 | tangorn | 2005-08-28 13:25:41 | None |
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Fixed the crash on switching from existing to new environment | |||
| Revision 1.34 | tangorn | 2005-08-26 14:05:06 | None |
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Fixed full size gates from scaled populations; fixed couple of memory leaks | |||
| Revision 1.33 | tangorn | 2005-08-26 10:02:24 | None |
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Debugging version: catching the crash in kinmaze on new environment | |||
| Revision 1.32 | tangorn | 2005-08-25 17:19:51 | None |
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Update of the user manual, still incomplete; New input protocol editor, still buggy if used with navigation environment, should be fine with generic | |||
| Revision 1.31 | tangorn | 2005-04-02 11:05:43 | None |
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Interface fixes: Properly sets recent files checkmark on restart; Missing menu option Network->Create restored; Population size can be scaled by integer factor from the size of environment | |||
| Revision 1.30 | tangorn | 2005-03-08 21:27:45 | None |
|
Changed trajectory recording to C file I/O for speed, corrected TSC readings in Qt speed adjustment | |||
| Revision 1.29 | tangorn | 2005-03-08 09:10:19 | None |
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New synapses are now fully ready for testing | |||
| Revision 1.28 | tangorn | 2005-03-07 08:41:06 | None |
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Fixed a serious population resizing bug that might have been the cause of three different types of crashes I have seen... | |||
| Revision 1.27 | tangorn | 2005-03-06 07:00:25 | None |
|
Added interface and parsing to handle depleteable transmitters (unfinished) and connection-specific axonal delays. Testing in progress. | |||
| Revision 1.26 | tangorn | 2004-12-30 18:14:42 | None |
|
This brings together all types of data visualisation that exist up to date: based on the same classes they exibit similar behaviors like scaling, saving, switching between color and grayscale pallette etc. | |||
| Revision 1.25 | tangorn | 2004-12-26 15:24:23 | None |
|
Converted population display to a child of image plotter. Fixed minor bugs in CSD and place field displays. | |||
| Revision 1.24 | tangorn | 2004-12-25 10:01:09 | None |
|
Fixed crash on exit | |||
| Revision 1.23 | tangorn | 2004-12-24 15:48:26 | None |
|
Now LFP and CSD plotting is available for generic environment | |||
| Revision 1.22 | tangorn | 2004-12-23 19:51:51 | None |
|
That fixes the width being to narrow | |||
| Revision 1.21 | tangorn | 2004-12-23 14:36:28 | None |
|
Partial fix for the population window sizing. It is initially proportional to the population size and tries to keep the height to width ratio while being resized. Currently messes up the layout if the width is either too large (buttons slide out of view) or too small (button text is obscured). | |||
| Revision 1.20 | tangorn | 2004-10-19 10:05:26 | None |
|
As my priceless user poited out the backward compatibility fix was not complete in yesterday commit. Here is the fix of the fix :) | |||
| Revision 1.19 | tangorn | 2004-10-18 07:47:43 | None |
|
This should fix compillation problem for Qt < 3.3 and KDE < 3.2; Also added our specific mime type for NeuroML (*.nml), can load both old (*.xml) and new extensions, saves as new ones... | |||
| Revision 1.18 | tangorn | 2004-10-09 03:32:56 | None |
|
Made random reward restocking an option. This lifts the warning set in Oct 1st commit, all new features are now configurable instead of hardcoded. Also added grayscale display option for population activity display and ability to save the picture of activity at any moment | |||
| Revision 1.17 | tangorn | 2004-09-22 06:26:46 | None |
|
Depotentiation window length is a working parameter setting now | |||
| Revision 1.16 | tangorn | 2004-09-19 19:24:21 | None |
|
Making possible to change timestep between simulation segments. Minor fix of gap junction meta info | |||
| Revision 1.15 | tangorn | 2004-09-18 18:25:08 | None |
|
Different way to plot place fields; separate check mark for spike and voltage output | |||
| Revision 1.14 | tangorn | 2004-05-28 16:42:19 | None |
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Finalized new NeuroML tags parsing, backward compatible, can read old, new, or mixed format; saves in new. Stable. | |||
| Revision 1.13 | tangorn | 2004-04-28 12:55:51 | None |
|
Tested randomizing of axonal delay; also made the generator a static member of KAxonLayer | |||
| Revision 1.12 | tangorn | 2004-04-28 11:02:58 | None |
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Added (untested) randomization of axonal delays | |||
| Revision 1.11 | tangorn | 2004-04-05 11:11:42 | None |
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First take on place field display | |||
| Revision 1.10 | tangorn | 2004-04-04 15:01:10 | None |
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Critical fix: crash if changing the size of the environment when the network has all-to-one connection from input-size population | |||
| Revision 1.9 | tangorn | 2004-03-12 16:06:08 | None |
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Corrections for the new SANNDRA API | |||
| Revision 1.8 | tangorn | 2004-02-26 13:48:39 | None |
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Fixed the population list update and caption update during population renaming. | |||
| Revision 1.7 | tangorn | 2003-12-10 14:48:09 | None |
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Attempt to control animation speed through measuring of the simulation performance | |||
| Revision 1.6 | tangorn | 2003-10-31 07:13:36 | None |
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Minor fix in setting the passive decay rate for learning; Started adding placefield/synaptic strength display. | |||
| Revision 1.5 | tangorn | 2003-09-08 11:51:31 | None |
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Adjusted the display color coding for the new reduced equation | |||
| Revision 1.4 | tangorn | 2003-08-20 10:53:02 | None |
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Changed "display" tag to "monitor" for readability; fixed the step size of g_bar widget; fixed resistance->conductance transform for gap junctions. | |||
| Revision 1.3 | tangorn | 2003-07-28 12:23:17 | None |
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Updated documentation; Changed status bar operation; Added progress bar; Weights are not any longer reloaded on reset if the network or environment changed; Populations are no longer recreated if edited; Error messages updated for more understandability; Switched leakage to inverted gate in standard channel; Changed leakage conductance units to pS; Changed item correction editor to load specific page with error; Added weight bounds and reduced learning rate 10 times; Set default salience to 100; Changed gate pages to static to speed up editor loading; Made network description static; Updated default channel and neuron files. | |||
| Revision 1.2 | tangorn | 2003-07-18 10:57:30 | None |
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Converted network editor to tree form, made all widgets for currents unified. Fixed the proper timing of reward disappearance. Other minor fixes. | |||
| Revision 1.1 | tangorn | 2003-03-23 23:22:14 | None |
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Initial revision | |||
| Revision 1.1.1.1 | tangorn | 2003-03-23 23:22:14 | None |
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Resurrection of CVS server for KInNeSS | |||
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Filename: klayer.h | |||
| Revision 1.37 | tangorn | 2008-10-22 16:20:23 | None |
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Added interface and parsing for random injection current | |||
| Revision 1.36 | tangorn | 2008-06-10 06:04:48 | None |
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Generating and parsing synaptic weights: New style almost complete. Remaining issue - one-to-one projections are not working properly | |||
| Revision 1.35 | tangorn | 2007-11-30 12:28:23 | None |
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Adaptation for new weights and delays, unstable | |||
| Revision 1.34 | tangorn | 2007-09-06 10:18:40 | None |
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New handling of weights and axonal delays, THIS IS UNFINISHED | |||
| Revision 1.33 | tangorn | 2007-08-15 19:23:59 | None |
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Fixed a bug in xml parsing of branched neurons, courtesy of Jasmin Leveille | |||
| Revision 1.32 | tangorn | 2007-08-10 09:57:26 | None |
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Rough draft of branching dendrites added, thus version number updated to 0.3.4 | |||
| Revision 1.31 | tangorn | 2006-03-18 20:36:35 | None |
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ompiles with gcc-4.0.2 now | |||
| Revision 1.30 | tangorn | 2005-12-20 19:52:27 | None |
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Fixed crash on switch from scaled to relative. Synapses seem fine, gap junctions seem shifted towards origin | |||
| Revision 1.29 | tangorn | 2005-12-20 18:03:26 | None |
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Almost finished scaled addressing. Might sometimes crash in populations with many links from sources of different sizes | |||
| Revision 1.28 | tangorn | 2005-12-20 14:55:37 | None |
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Fixed crash on gate resizing | |||
| Revision 1.27 | tangorn | 2005-12-16 09:44:24 | None |
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Unstable version using full functionality of scaled addressing | |||
| Revision 1.26 | tangorn | 2005-09-30 08:24:56 | None |
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Changed code to compile with gcc-3.4.4. Partially implemented new address scaling functionality | |||
| Revision 1.25 | tangorn | 2005-08-26 14:05:06 | None |
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Fixed full size gates from scaled populations; fixed couple of memory leaks | |||
| Revision 1.24 | tangorn | 2005-08-25 17:19:51 | None |
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Update of the user manual, still incomplete; New input protocol editor, still buggy if used with navigation environment, should be fine with generic | |||
| Revision 1.23 | tangorn | 2005-03-08 16:00:19 | None |
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Changed the sizes of SANNDRA integer parameters | |||
| Revision 1.22 | tangorn | 2005-03-07 08:41:06 | None |
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Fixed a serious population resizing bug that might have been the cause of three different types of crashes I have seen... | |||
| Revision 1.21 | tangorn | 2005-03-06 07:00:25 | None |
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Added interface and parsing to handle depleteable transmitters (unfinished) and connection-specific axonal delays. Testing in progress. | |||
| Revision 1.20 | tangorn | 2004-12-30 18:14:42 | None |
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This brings together all types of data visualisation that exist up to date: based on the same classes they exibit similar behaviors like scaling, saving, switching between color and grayscale pallette etc. | |||
| Revision 1.19 | tangorn | 2004-12-24 15:48:26 | None |
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Now LFP and CSD plotting is available for generic environment | |||
| Revision 1.18 | tangorn | 2004-10-09 03:32:56 | None |
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Made random reward restocking an option. This lifts the warning set in Oct 1st commit, all new features are now configurable instead of hardcoded. Also added grayscale display option for population activity display and ability to save the picture of activity at any moment | |||
| Revision 1.17 | tangorn | 2004-09-23 11:01:19 | None |
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Continue to test randomized weights | |||
| Revision 1.16 | tangorn | 2004-09-22 06:26:46 | None |
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Depotentiation window length is a working parameter setting now | |||
| Revision 1.15 | tangorn | 2004-09-19 19:24:21 | None |
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Making possible to change timestep between simulation segments. Minor fix of gap junction meta info | |||
| Revision 1.14 | tangorn | 2004-09-18 18:25:08 | None |
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Different way to plot place fields; separate check mark for spike and voltage output | |||
| Revision 1.13 | tangorn | 2004-05-28 16:42:19 | None |
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Finalized new NeuroML tags parsing, backward compatible, can read old, new, or mixed format; saves in new. Stable. | |||
| Revision 1.12 | tangorn | 2004-04-28 12:55:51 | None |
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Tested randomizing of axonal delay; also made the generator a static member of KAxonLayer | |||
| Revision 1.11 | tangorn | 2004-04-05 11:11:42 | None |
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First take on place field display | |||
| Revision 1.10 | tangorn | 2004-04-04 15:01:10 | None |
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Critical fix: crash if changing the size of the environment when the network has all-to-one connection from input-size population | |||
| Revision 1.9 | tangorn | 2004-03-12 16:06:08 | None |
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Corrections for the new SANNDRA API | |||
| Revision 1.8 | tangorn | 2004-03-09 17:52:53 | None |
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Fixed renaming the populations (so that they appear on the source combo when the editor kicks in for missing source); Added most of gap junctions code; still missing: adding new sources to list when the compartment is added or cloning is used, All-to-one kernels causes crash. | |||
| Revision 1.7 | tangorn | 2003-10-31 07:13:36 | None |
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Minor fix in setting the passive decay rate for learning; Started adding placefield/synaptic strength display. | |||
| Revision 1.6 | tangorn | 2003-09-22 06:52:45 | None |
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Fixed the bug in saving the population settings after canceling the editor | |||
| Revision 1.5 | tangorn | 2003-09-16 09:44:42 | None |
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Added interface and handling of voltage-dependent block (i.e. Mg block in NMDA) | |||
| Revision 1.4 | tangorn | 2003-08-20 10:53:02 | None |
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Changed "display" tag to "monitor" for readability; fixed the step size of g_bar widget; fixed resistance->conductance transform for gap junctions. | |||
| Revision 1.3 | tangorn | 2003-07-28 12:23:17 | None |
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Updated documentation; Changed status bar operation; Added progress bar; Weights are not any longer reloaded on reset if the network or environment changed; Populations are no longer recreated if edited; Error messages updated for more understandability; Switched leakage to inverted gate in standard channel; Changed leakage conductance units to pS; Changed item correction editor to load specific page with error; Added weight bounds and reduced learning rate 10 times; Set default salience to 100; Changed gate pages to static to speed up editor loading; Made network description static; Updated default channel and neuron files. | |||
| Revision 1.2 | tangorn | 2003-07-18 10:57:30 | None |
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Converted network editor to tree form, made all widgets for currents unified. Fixed the proper timing of reward disappearance. Other minor fixes. | |||
| Revision 1.1 | tangorn | 2003-03-23 23:22:15 | None |
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Initial revision | |||
| Revision 1.1.1.1 | tangorn | 2003-03-23 23:22:15 | None |
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Resurrection of CVS server for KInNeSS | |||
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Filename: klayerparse.cpp | |||
| Revision 1.63 | tangorn | 2008-10-22 16:20:23 | None |
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Added interface and parsing for random injection current | |||
| Revision 1.62 | tangorn | 2008-02-20 19:34:32 | None |
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Fixed intercompartmental currents and gap junctions | |||
| Revision 1.61 | tangorn | 2008-01-28 18:38:23 | None |
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Preparation for release | |||
| Revision 1.60 | tangorn | 2007-11-30 12:28:23 | None |
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Adaptation for new weights and delays, unstable | |||
| Revision 1.59 | tangorn | 2007-09-06 10:18:40 | None |
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New handling of weights and axonal delays, THIS IS UNFINISHED | |||
| Revision 1.58 | tangorn | 2007-08-29 17:02:00 | None |
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Seems like it is ubuntu that is wrong, not the code` | |||
| Revision 1.57 | tangorn | 2007-08-29 15:06:06 | None |
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Some ubuntu with gcc-4.1.2 fixes | |||
| Revision 1.56 | tangorn | 2007-08-18 10:01:19 | None |
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New way to calculate intercompartmental current | |||
| Revision 1.55 | tangorn | 2007-08-15 19:23:59 | None |
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Fixed a bug in xml parsing of branched neurons, courtesy of Jasmin Leveille | |||
| Revision 1.54 | tangorn | 2007-08-10 09:57:26 | None |
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Rough draft of branching dendrites added, thus version number updated to 0.3.4 | |||
| Revision 1.53 | tangorn | 2005-12-21 08:10:11 | None |
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Fixed crash on loading some environments with scaled connectivity | |||
| Revision 1.52 | tangorn | 2005-12-20 19:52:27 | None |
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Fixed crash on switch from scaled to relative. Synapses seem fine, gap junctions seem shifted towards origin | |||
| Revision 1.51 | tangorn | 2005-12-20 14:55:37 | None |
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Fixed crash on gate resizing | |||
| Revision 1.50 | tangorn | 2005-12-16 13:45:10 | None |
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Fixed the crash, but 3->5 still does not scale properly | |||
| Revision 1.49 | tangorn | 2005-12-16 09:44:24 | None |
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Unstable version using full functionality of scaled addressing | |||
| Revision 1.48 | tangorn | 2005-12-05 15:39:45 | None |
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Generation of scaled Gaussian kernels should work now | |||
| Revision 1.47 | tangorn | 2005-11-30 18:18:22 | None |
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Fixed kernel creation for non-scaled projections | |||
| Revision 1.46 | tangorn | 2005-11-22 07:50:24 | None |
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Preparing fo kernel families in address scaling; Fixed bug that overwrote network file after Network->New menu selection | |||
| Revision 1.45 | tangorn | 2005-09-30 08:24:56 | None |
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Changed code to compile with gcc-3.4.4. Partially implemented new address scaling functionality | |||
| Revision 1.44 | tangorn | 2005-08-31 19:14:24 | None |
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Clean up | |||
| Revision 1.43 | tangorn | 2005-08-26 14:05:06 | None |
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Fixed full size gates from scaled populations; fixed couple of memory leaks | |||
| Revision 1.42 | tangorn | 2005-08-25 17:19:51 | None |
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Update of the user manual, still incomplete; New input protocol editor, still buggy if used with navigation environment, should be fine with generic | |||
| Revision 1.41 | tangorn | 2005-04-02 11:05:43 | None |
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Interface fixes: Properly sets recent files checkmark on restart; Missing menu option Network->Create restored; Population size can be scaled by integer factor from the size of environment | |||
| Revision 1.40 | tangorn | 2005-03-07 08:41:06 | None |
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Fixed a serious population resizing bug that might have been the cause of three different types of crashes I have seen... | |||
| Revision 1.39 | tangorn | 2005-03-06 07:00:25 | None |
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Added interface and parsing to handle depleteable transmitters (unfinished) and connection-specific axonal delays. Testing in progress. | |||
| Revision 1.38 | tangorn | 2004-12-29 00:26:45 | None |
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Fixed the crash on simulation reset when the All-to-one gate has been removed from the network | |||
| Revision 1.37 | tangorn | 2004-10-01 12:41:25 | None |
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Bugfix of modulation | |||
| Revision 1.36 | tangorn | 2004-09-23 11:01:19 | None |
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Continue to test randomized weights | |||
| Revision 1.35 | tangorn | 2004-09-21 10:30:22 | None |
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Better interface to handle new learning rules. Interface allows to set basic weight (the one that will be approached with learning if no correlation is present) and maximal weight now. Initial weights are calculated as following: a) If the connection is flat (one-to-one or all-to-one) the starting weight is set to the basic weight. b) If the connection is Gaussian, the weights are calculated as before, using maximal weight for the peak of the Gaussian. Instructions for loading old networks: until you open the network/population editor and click save - nothing changes in the behavior of your old network. If you open the editor, you will see that old weights are now maximal weights, while new basic weights are set to 0.5 of maximal. That means, all your Gaussian projections are good to go as they are, but for every flat projection the starting weight is half of what it was. Manual correction is the solution. | |||
| Revision 1.34 | tangorn | 2004-09-19 19:24:21 | None |
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Making possible to change timestep between simulation segments. Minor fix of gap junction meta info | |||
| Revision 1.33 | tangorn | 2004-06-29 13:44:22 | None |
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More metainfo creation, should be complete now | |||
| Revision 1.32 | tangorn | 2004-06-27 12:12:05 | None |
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Aside from adding metainfo for gap junctions fixed a bug in new channel creation | |||
| Revision 1.31 | tangorn | 2004-06-26 17:28:31 | None |
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Cleaned some debugging output | |||
| Revision 1.30 | tangorn | 2004-06-26 10:47:24 | None |
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Changed the version to 0.3.3. Starting from this commit it can only compile against SANNDRA 1.1.x. kinness-0.3.2 (until this commit) can compile against either 1.1.x or 1.0.x. So far kinness just gives SANNDRA some metainfo to mess with, will be used to add stiff integration | |||
| Revision 1.29 | tangorn | 2004-05-28 16:42:19 | None |
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Finalized new NeuroML tags parsing, backward compatible, can read old, new, or mixed format; saves in new. Stable. | |||
| Revision 1.28 | tangorn | 2004-05-26 15:40:47 | None |
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Added direct injected current (type "injection"); redid the interface for input voltage (type "input") with backward compatibility check in the network editor. Requires to open and save your old networks by the editor before running. "AHP" dependency is now called "AHP/ADP", also should be backward compatible. Fixed sliders in the SANNDRA preference page. Extended the ranges for time constants up to 300/500 ms. Added a comment editor to the network editor, do not use it yet though, I need to make it NeuroML compliant first. Fixed the compartmental dimensions, note that interface still uses mm as units, but NeuroML description now uses cm, so old networks should be manually corrected. | |||
| Revision 1.27 | tangorn | 2004-05-06 16:03:57 | None |
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Fixed the reset. Added a lot of standard shortcuts and their descriptions in the manual. Made the trajectory recording optional. | |||
| Revision 1.26 | tangorn | 2004-04-24 14:23:01 | None |
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Fully compatible with SANNDRA RC1 | |||
| Revision 1.25 | tangorn | 2004-04-21 10:29:45 | None |
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Final cleaning for the new gating API in SANNDRA | |||
| Revision 1.24 | tangorn | 2004-04-20 13:21:39 | None |
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Fixed one memory leak in the process of following SANNDRA new API | |||
| Revision 1.23 | tangorn | 2004-04-20 06:20:09 | None |
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Corresponds to UNSTABLE SANNDRA commit. | |||
| Revision 1.22 | tangorn | 2004-04-18 19:45:34 | None |
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SANNDRA API slightly changed, corresponding fixes. | |||
| Revision 1.21 | tangorn | 2004-04-04 15:01:10 | None |
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Critical fix: crash if changing the size of the environment when the network has all-to-one connection from input-size population | |||
| Revision 1.20 | tangorn | 2004-03-22 13:27:47 | None |
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Fixed the bug in setting axial resistance. | |||
| Revision 1.19 | tangorn | 2004-03-22 12:12:10 | None |
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Fixed the crash with all-to-one gap junctions. | |||
| Revision 1.18 | tangorn | 2004-03-21 13:58:47 | None |
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Added parsing of the default compartmental leakage | |||
| Revision 1.17 | tangorn | 2004-03-20 19:17:24 | None |
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Fixed setting proper compartment names for gap junctions when adding new compartment. Fixed parsing of leakage reverse potential. Fixed parsing of NMDA. | |||
| Revision 1.16 | tangorn | 2004-03-12 16:06:08 | None |
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Corrections for the new SANNDRA API | |||
| Revision 1.15 | tangorn | 2004-03-09 17:52:53 | None |
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Fixed renaming the populations (so that they appear on the source combo when the editor kicks in for missing source); Added most of gap junctions code; still missing: adding new sources to list when the compartment is added or cloning is used, All-to-one kernels causes crash. | |||
| Revision 1.14 | tangorn | 2004-02-26 13:48:39 | None |
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Fixed the population list update and caption update during population renaming. | |||
| Revision 1.13 | tangorn | 2004-02-26 07:13:53 | None |
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Fixed: leakage current; default voltages in voltage gated channel parsing; conductance ranges; labels for m/tau description of voltage dependency. Added: explicit representation for compartmental dimensions | |||
| Revision 1.12 | tangorn | 2004-02-09 20:29:23 | None |
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Fixing the spike generation; Partial interface for gap junctions; All voltage gated channels now should have V0 relative to Vrest, the default channels are fixed accordingly. | |||
| Revision 1.11 | tangorn | 2004-01-28 19:47:21 | None |
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Long live valgrind. Bugfixes. | |||
| Revision 1.10 | tangorn | 2003-12-30 14:28:43 | None |
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Added interface and parsing for m/tau voltage dependence and the interface for setting taus in Ca++ channels; two default Ca++ channels added | |||
| Revision 1.9 | tangorn | 2003-10-26 11:00:03 | None |
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Separated KInput<T> and children into a file; Minor bugfixes in handling leakage and voltage block gates; Reworked the projection source settings and made possible to use fan input currents. | |||
| Revision 1.8 | tangorn | 2003-09-29 12:25:56 | None |
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Minor fix of neuromodulation of spiking threshold in reduced channel | |||
| Revision 1.7 | tangorn | 2003-09-16 09:44:42 | None |
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Added interface and handling of voltage-dependent block (i.e. Mg block in NMDA) | |||
| Revision 1.6 | tangorn | 2003-09-08 11:51:31 | None |
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Adjusted the display color coding for the new reduced equation | |||
| Revision 1.5 | tangorn | 2003-08-28 16:44:07 | None |
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Reworked the reduced channel interface, now leakage is included and parameters are set by setting the threshold voltage and membrane constant; fixed layout management in chemical channels; fixed suffixes in conductance widget; fixed disabling the run on population editor cancellation. | |||
| Revision 1.4 | tangorn | 2003-08-20 10:53:02 | None |
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Changed "display" tag to "monitor" for readability; fixed the step size of g_bar widget; fixed resistance->conductance transform for gap junctions. | |||
| Revision 1.3 | tangorn | 2003-07-28 12:23:17 | None |
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Updated documentation; Changed status bar operation; Added progress bar; Weights are not any longer reloaded on reset if the network or environment changed; Populations are no longer recreated if edited; Error messages updated for more understandability; Switched leakage to inverted gate in standard channel; Changed leakage conductance units to pS; Changed item correction editor to load specific page with error; Added weight bounds and reduced learning rate 10 times; Set default salience to 100; Changed gate pages to static to speed up editor loading; Made network description static; Updated default channel and neuron files. | |||
| Revision 1.2 | tangorn | 2003-07-18 10:57:30 | None |
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Converted network editor to tree form, made all widgets for currents unified. Fixed the proper timing of reward disappearance. Other minor fixes. | |||
| Revision 1.1 | tangorn | 2003-03-23 23:22:15 | None |
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Initial revision | |||
| Revision 1.1.1.1 | tangorn | 2003-03-23 23:22:15 | None |
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Resurrection of CVS server for KInNeSS | |||
|
Filename: ksim.cpp | |||
| Revision 1.42 | tangorn | 2007-11-30 12:28:23 | None |
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Adaptation for new weights and delays, unstable | |||
| Revision 1.41 | tangorn | 2007-11-09 10:10:34 | None |
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Fixed e-mail | |||
| Revision 1.40 | tangorn | 2007-08-15 19:23:59 | None |
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Fixed a bug in xml parsing of branched neurons, courtesy of Jasmin Leveille | |||
| Revision 1.39 | tangorn | 2006-02-26 10:43:14 | None |
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Fixed a crash at the end of simulation due to calling GUI from simulation thread | |||
| Revision 1.38 | tangorn | 2005-12-20 14:55:37 | None |
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Fixed crash on gate resizing | |||
| Revision 1.37 | tangorn | 2005-09-30 08:24:56 | None |
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Changed code to compile with gcc-3.4.4. Partially implemented new address scaling functionality | |||
| Revision 1.36 | tangorn | 2005-08-30 11:14:32 | None |
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Adding scaled adressing | |||
| Revision 1.35 | tangorn | 2005-08-28 13:25:41 | None |
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Fixed the crash on switching from existing to new environment | |||
| Revision 1.34 | tangorn | 2005-08-26 10:02:24 | None |
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Debugging version: catching the crash in kinmaze on new environment | |||
| Revision 1.33 | tangorn | 2005-08-25 17:19:51 | None |
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Update of the user manual, still incomplete; New input protocol editor, still buggy if used with navigation environment, should be fine with generic | |||
| Revision 1.32 | tangorn | 2005-03-08 21:27:45 | None |
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Changed trajectory recording to C file I/O for speed, corrected TSC readings in Qt speed adjustment | |||
| Revision 1.31 | tangorn | 2005-03-07 08:41:06 | None |
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Fixed a serious population resizing bug that might have been the cause of three different types of crashes I have seen... | |||
| Revision 1.30 | tangorn | 2005-03-06 07:00:25 | None |
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Added interface and parsing to handle depleteable transmitters (unfinished) and connection-specific axonal delays. Testing in progress. | |||
| Revision 1.29 | tangorn | 2005-01-16 11:30:38 | None |
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Introduced input protocols | |||
| Revision 1.28 | tangorn | 2004-12-30 18:14:42 | None |
|
This brings together all types of data visualisation that exist up to date: based on the same classes they exibit similar behaviors like scaling, saving, switching between color and grayscale pallette etc. | |||
| Revision 1.27 | tangorn | 2004-12-25 15:15:16 | None |
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A fix for trajectory file not being flushed properly | |||
| Revision 1.26 | tangorn | 2004-12-24 15:48:26 | None |
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Now LFP and CSD plotting is available for generic environment | |||
| Revision 1.25 | tangorn | 2004-12-24 12:16:15 | None |
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This is reasonably correct version of LFP and CSD plotting, still a lot to work on | |||
| Revision 1.24 | tangorn | 2004-10-09 03:32:56 | None |
|
Made random reward restocking an option. This lifts the warning set in Oct 1st commit, all new features are now configurable instead of hardcoded. Also added grayscale display option for population activity display and ability to save the picture of activity at any moment | |||
| Revision 1.23 | tangorn | 2004-10-05 20:03:09 | None |
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Added DEPDIRS to cvsignores; Changed trajectory file output to only write when the coordinate changes; Rewrote place field display for new optimized input, it also handles old full input; Replaced deprecated repaintNoErase with noAutoErase; Supposedly fixed progress bar for small network loading. | |||
| Revision 1.22 | tangorn | 2004-10-03 17:17:22 | None |
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Fixed the time getting off in trajectory file for long simulations | |||
| Revision 1.21 | tangorn | 2004-09-30 21:10:08 | None |
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WARNING! This commit brings in some stuff that makes navigational environment to behave in unusual fasion. It is not intended for users, I just need to transfer these files on other machine. They will be either removed or corrected later. | |||
| Revision 1.20 | tangorn | 2004-06-26 10:47:24 | None |
|
Changed the version to 0.3.3. Starting from this commit it can only compile against SANNDRA 1.1.x. kinness-0.3.2 (until this commit) can compile against either 1.1.x or 1.0.x. So far kinness just gives SANNDRA some metainfo to mess with, will be used to add stiff integration | |||
| Revision 1.19 | tangorn | 2004-05-28 16:42:19 | None |
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Finalized new NeuroML tags parsing, backward compatible, can read old, new, or mixed format; saves in new. Stable. | |||
| Revision 1.18 | tangorn | 2004-05-26 15:40:47 | None |
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Added direct injected current (type "injection"); redid the interface for input voltage (type "input") with backward compatibility check in the network editor. Requires to open and save your old networks by the editor before running. "AHP" dependency is now called "AHP/ADP", also should be backward compatible. Fixed sliders in the SANNDRA preference page. Extended the ranges for time constants up to 300/500 ms. Added a comment editor to the network editor, do not use it yet though, I need to make it NeuroML compliant first. Fixed the compartmental dimensions, note that interface still uses mm as units, but NeuroML description now uses cm, so old networks should be manually corrected. | |||
| Revision 1.17 | tangorn | 2004-05-10 19:37:46 | None |
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Manual almost done, plus minor fix of UI | |||
| Revision 1.16 | tangorn | 2004-05-06 16:03:57 | None |
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Fixed the reset. Added a lot of standard shortcuts and their descriptions in the manual. Made the trajectory recording optional. | |||
| Revision 1.15 | tangorn | 2004-04-26 17:06:18 | None |
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Added interface and parsing for the fourth input channel; Fixed a number of interface bugs. | |||
| Revision 1.14 | tangorn | 2004-04-24 14:23:01 | None |
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Fully compatible with SANNDRA RC1 | |||
| Revision 1.13 | tangorn | 2004-04-18 19:45:34 | None |
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SANNDRA API slightly changed, corresponding fixes. | |||
| Revision 1.12 | tangorn | 2004-04-05 11:11:42 | None |
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First take on place field display | |||
| Revision 1.11 | tangorn | 2004-04-04 15:39:12 | None |
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Added trajectory saving in trajectory.dat | |||
| Revision 1.10 | tangorn | 2004-04-03 22:40:25 | None |
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Adding the trajectory output | |||
| Revision 1.9 | tangorn | 2004-01-29 10:15:05 | None |
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More critical bugfixes | |||
| Revision 1.8 | tangorn | 2004-01-15 16:03:36 | None |
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Generic part is ready now for Max to start testing; Common code from it and maze part moved to project part | |||
| Revision 1.7 | tangorn | 2004-01-12 14:35:14 | None |
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Delete the default element tree in destructor; still leaks memory somewhwere | |||
| Revision 1.6 | tangorn | 2004-01-10 19:15:50 | None |
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Test of ID in the file | |||
| Revision 1.5 | tangorn | 2003-12-18 12:43:43 | None |
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Added a bit of session management; Fixed wrong starting path in weight save/load dialog; Fixed statusbar not showing temporary messages. | |||
| Revision 1.4 | tangorn | 2003-12-10 14:48:09 | None |
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Attempt to control animation speed through measuring of the simulation performance | |||
| Revision 1.3 | tangorn | 2003-09-21 13:26:10 | None |
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New version of status bar uses stack of messages, so several actions can be performed and displayed correctly. Doxygen settings removed from CVS. | |||
| Revision 1.2 | tangorn | 2003-07-28 12:23:17 | None |
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Updated documentation; Changed status bar operation; Added progress bar; Weights are not any longer reloaded on reset if the network or environment changed; Populations are no longer recreated if edited; Error messages updated for more understandability; Switched leakage to inverted gate in standard channel; Changed leakage conductance units to pS; Changed item correction editor to load specific page with error; Added weight bounds and reduced learning rate 10 times; Set default salience to 100; Changed gate pages to static to speed up editor loading; Made network description static; Updated default channel and neuron files. | |||
| Revision 1.1 | tangorn | 2003-03-23 23:22:15 | None |
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Initial revision | |||
| Revision 1.1.1.1 | tangorn | 2003-03-23 23:22:15 | None |
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Resurrection of CVS server for KInNeSS | |||
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Filename: ksim.h | |||
| Revision 1.32 | tangorn | 2007-11-30 12:28:23 | None |
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Adaptation for new weights and delays, unstable | |||
| Revision 1.31 | tangorn | 2007-08-10 09:57:26 | None |
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Rough draft of branching dendrites added, thus version number updated to 0.3.4 | |||
| Revision 1.30 | tangorn | 2006-02-26 10:43:14 | None |
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Fixed a crash at the end of simulation due to calling GUI from simulation thread | |||
| Revision 1.29 | tangorn | 2005-09-30 08:24:56 | None |
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Changed code to compile with gcc-3.4.4. Partially implemented new address scaling functionality | |||
| Revision 1.28 | tangorn | 2005-08-25 17:19:51 | None |
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Update of the user manual, still incomplete; New input protocol editor, still buggy if used with navigation environment, should be fine with generic | |||
| Revision 1.27 | tangorn | 2005-03-08 09:10:19 | None |
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New synapses are now fully ready for testing | |||
| Revision 1.26 | tangorn | 2005-03-07 08:41:06 | None |
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Fixed a serious population resizing bug that might have been the cause of three different types of crashes I have seen... | |||
| Revision 1.25 | tangorn | 2005-03-06 07:00:25 | None |
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Added interface and parsing to handle depleteable transmitters (unfinished) and connection-specific axonal delays. Testing in progress. | |||
| Revision 1.24 | tangorn | 2005-01-16 11:30:38 | None |
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Introduced input protocols | |||
| Revision 1.23 | tangorn | 2004-12-27 09:07:59 | None |
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Now the placefield display is also built on image plotter | |||
| Revision 1.22 | tangorn | 2004-12-25 15:15:16 | None |
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A fix for trajectory file not being flushed properly | |||
| Revision 1.21 | tangorn | 2004-12-24 15:48:26 | None |
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Now LFP and CSD plotting is available for generic environment | |||
| Revision 1.20 | tangorn | 2004-12-24 12:16:15 | None |
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This is reasonably correct version of LFP and CSD plotting, still a lot to work on | |||
| Revision 1.19 | tangorn | 2004-10-09 03:32:56 | None |
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Made random reward restocking an option. This lifts the warning set in Oct 1st commit, all new features are now configurable instead of hardcoded. Also added grayscale display option for population activity display and ability to save the picture of activity at any moment | |||
| Revision 1.18 | tangorn | 2004-09-30 21:10:08 | None |
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WARNING! This commit brings in some stuff that makes navigational environment to behave in unusual fasion. It is not intended for users, I just need to transfer these files on other machine. They will be either removed or corrected later. | |||
| Revision 1.17 | tangorn | 2004-06-26 16:50:30 | None |
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Minor change in handling preference pages | |||
| Revision 1.16 | tangorn | 2004-04-26 11:17:57 | None |
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Minor fix of speed adjustment and part of user manual update. | |||
| Revision 1.15 | tangorn | 2004-04-24 14:23:01 | None |
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Fully compatible with SANNDRA RC1 | |||
| Revision 1.14 | tangorn | 2004-04-05 11:11:42 | None |
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First take on place field display | |||
| Revision 1.13 | tangorn | 2004-04-04 15:39:12 | None |
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Added trajectory saving in trajectory.dat | |||
| Revision 1.12 | tangorn | 2004-04-03 22:40:25 | None |
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Adding the trajectory output | |||
| Revision 1.11 | tangorn | 2004-03-12 16:06:08 | None |
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Corrections for the new SANNDRA API | |||
| Revision 1.10 | tangorn | 2004-01-29 00:59:25 | None |
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New way of handling progress bar | |||
| Revision 1.9 | tangorn | 2004-01-15 16:03:36 | None |
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Generic part is ready now for Max to start testing; Common code from it and maze part moved to project part | |||
| Revision 1.8 | tangorn | 2003-12-30 14:48:38 | None |
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Fixed the crash on destruction of KAxonUnit (happened on some systems) | |||
| Revision 1.7 | tangorn | 2003-12-10 14:48:09 | None |
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Attempt to control animation speed through measuring of the simulation performance | |||
| Revision 1.6 | tangorn | 2003-10-26 11:00:03 | None |
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Separated KInput<T> and children into a file; Minor bugfixes in handling leakage and voltage block gates; Reworked the projection source settings and made possible to use fan input currents. | |||
| Revision 1.5 | tangorn | 2003-09-22 06:52:45 | None |
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Fixed the bug in saving the population settings after canceling the editor | |||
| Revision 1.4 | tangorn | 2003-09-21 11:41:56 | None |
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Set the progress bar to show progress during simulation run, currently only works if Autoupdate is on and network controls behavior | |||
| Revision 1.3 | tangorn | 2003-07-28 12:23:17 | None |
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Updated documentation; Changed status bar operation; Added progress bar; Weights are not any longer reloaded on reset if the network or environment changed; Populations are no longer recreated if edited; Error messages updated for more understandability; Switched leakage to inverted gate in standard channel; Changed leakage conductance units to pS; Changed item correction editor to load specific page with error; Added weight bounds and reduced learning rate 10 times; Set default salience to 100; Changed gate pages to static to speed up editor loading; Made network description static; Updated default channel and neuron files. | |||
| Revision 1.2 | tangorn | 2003-07-18 10:57:30 | None |
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Converted network editor to tree form, made all widgets for currents unified. Fixed the proper timing of reward disappearance. Other minor fixes. | |||
| Revision 1.1 | tangorn | 2003-03-23 23:22:15 | None |
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Initial revision | |||
| Revision 1.1.1.1 | tangorn | 2003-03-23 23:22:15 | None |
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Resurrection of CVS server for KInNeSS | |||
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Filename: ksimparse.cpp | |||
| Revision 1.36 | tangorn | 2007-11-30 12:28:23 | None |
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Adaptation for new weights and delays, unstable | |||
| Revision 1.35 | tangorn | 2007-08-29 17:02:00 | None |
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Seems like it is ubuntu that is wrong, not the code` | |||
| Revision 1.34 | tangorn | 2007-08-29 15:06:06 | None |
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Some ubuntu with gcc-4.1.2 fixes | |||
| Revision 1.33 | tangorn | 2007-08-10 09:57:26 | None |
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Rough draft of branching dendrites added, thus version number updated to 0.3.4 | |||
| Revision 1.32 | tangorn | 2005-08-25 17:19:51 | None |
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Update of the user manual, still incomplete; New input protocol editor, still buggy if used with navigation environment, should be fine with generic | |||
| Revision 1.31 | tangorn | 2005-04-02 11:05:43 | None |
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Interface fixes: Properly sets recent files checkmark on restart; Missing menu option Network->Create restored; Population size can be scaled by integer factor from the size of environment | |||
| Revision 1.30 | tangorn | 2005-03-31 13:50:20 | None |
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Fixed crash on exit if no environment was selected; Fixed CSD/LFP being not able to find cell description | |||
| Revision 1.29 | tangorn | 2005-03-07 08:41:06 | None |
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Fixed a serious population resizing bug that might have been the cause of three different types of crashes I have seen... | |||
| Revision 1.28 | tangorn | 2005-03-06 07:00:26 | None |
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Added interface and parsing to handle depleteable transmitters (unfinished) and connection-specific axonal delays. Testing in progress. | |||
| Revision 1.27 | tangorn | 2005-02-28 00:39:21 | None |
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Minor adjustments of scaling and event processing for CSD and LFP displays | |||
| Revision 1.26 | tangorn | 2004-12-30 18:14:42 | None |
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This brings together all types of data visualisation that exist up to date: based on the same classes they exibit similar behaviors like scaling, saving, switching between color and grayscale pallette etc. | |||
| Revision 1.25 | tangorn | 2004-12-27 09:07:59 | None |
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Now the placefield display is also built on image plotter | |||
| Revision 1.24 | tangorn | 2004-12-25 15:15:16 | None |
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A fix for trajectory file not being flushed properly | |||
| Revision 1.23 | tangorn | 2004-12-24 15:48:26 | None |
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Now LFP and CSD plotting is available for generic environment | |||
| Revision 1.22 | tangorn | 2004-12-24 12:16:15 | None |
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This is reasonably correct version of LFP and CSD plotting, still a lot to work on | |||
| Revision 1.21 | tangorn | 2004-09-30 21:10:08 | None |
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WARNING! This commit brings in some stuff that makes navigational environment to behave in unusual fasion. It is not intended for users, I just need to transfer these files on other machine. They will be either removed or corrected later. | |||
| Revision 1.20 | tangorn | 2004-06-29 13:44:22 | None |
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More metainfo creation, should be complete now | |||
| Revision 1.19 | tangorn | 2004-06-27 12:12:05 | None |
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Aside from adding metainfo for gap junctions fixed a bug in new channel creation | |||
| Revision 1.18 | tangorn | 2004-05-28 16:42:19 | None |
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Finalized new NeuroML tags parsing, backward compatible, can read old, new, or mixed format; saves in new. Stable. | |||
| Revision 1.17 | tangorn | 2004-05-26 23:55:30 | None |
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More NeuroML compliance | |||
| Revision 1.16 | tangorn | 2004-05-26 22:22:05 | None |
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Updated the top-level NeuroML hierarchy to match current examples on their web site. Backward compatible with old format. | |||
| Revision 1.15 | tangorn | 2004-04-28 11:02:58 | None |
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Added (untested) randomization of axonal delays | |||
| Revision 1.14 | tangorn | 2004-04-05 11:11:42 | None |
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First take on place field display | |||
| Revision 1.13 | tangorn | 2004-04-04 15:39:12 | None |
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Added trajectory saving in trajectory.dat | |||
| Revision 1.12 | tangorn | 2004-03-12 16:06:08 | None |
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Corrections for the new SANNDRA API | |||
| Revision 1.11 | tangorn | 2004-01-29 10:15:05 | None |
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More critical bugfixes | |||
| Revision 1.10 | tangorn | 2004-01-12 14:17:31 | None |
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Fixed enabling run inappropriately | |||
| Revision 1.9 | tangorn | 2004-01-10 19:31:33 | None |
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Updated copyright information, also added Id tags to files changed in 2004 | |||
| Revision 1.8 | tangorn | 2004-01-09 16:45:03 | None |
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Removed comments for loading default neurons | |||
| Revision 1.7 | tangorn | 2003-12-29 04:21:48 | None |
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Minor fixes of the graphics; fixed session management bug on KDE restore; set threshold in learning rule to threshold in reduced equation. | |||
| Revision 1.6 | tangorn | 2003-09-22 06:52:45 | None |
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Fixed the bug in saving the population settings after canceling the editor | |||
| Revision 1.5 | tangorn | 2003-09-21 13:26:10 | None |
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New version of status bar uses stack of messages, so several actions can be performed and displayed correctly. Doxygen settings removed from CVS. | |||
| Revision 1.4 | tangorn | 2003-08-28 16:44:07 | None |
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Reworked the reduced channel interface, now leakage is included and parameters are set by setting the threshold voltage and membrane constant; fixed layout management in chemical channels; fixed suffixes in conductance widget; fixed disabling the run on population editor cancellation. | |||
| Revision 1.3 | tangorn | 2003-07-28 12:23:17 | None |
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Updated documentation; Changed status bar operation; Added progress bar; Weights are not any longer reloaded on reset if the network or environment changed; Populations are no longer recreated if edited; Error messages updated for more understandability; Switched leakage to inverted gate in standard channel; Changed leakage conductance units to pS; Changed item correction editor to load specific page with error; Added weight bounds and reduced learning rate 10 times; Set default salience to 100; Changed gate pages to static to speed up editor loading; Made network description static; Updated default channel and neuron files. | |||
| Revision 1.2 | tangorn | 2003-07-18 10:57:30 | None |
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Converted network editor to tree form, made all widgets for currents unified. Fixed the proper timing of reward disappearance. Other minor fixes. | |||
| Revision 1.1 | tangorn | 2003-03-23 23:22:15 | None |
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Initial revision | |||
| Revision 1.1.1.1 | tangorn | 2003-03-23 23:22:15 | None |
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Resurrection of CVS server for KInNeSS | |||
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Filename: kunit.cpp | |||
| Revision 1.66 | tangorn | 2008-10-22 16:20:23 | None |
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Added interface and parsing for random injection current | |||
| Revision 1.65 | tangorn | 2008-06-12 15:45:06 | None |
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Added <?xml version='1.0' ?> tag to beginning of all saved xml documents. KInNeSS does not use it, so old files are still valid. | |||
| Revision 1.64 | tangorn | 2008-06-10 06:04:48 | None |
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Generating and parsing synaptic weights: New style almost complete. Remaining issue - one-to-one projections are not working properly | |||
| Revision 1.63 | tangorn | 2008-06-05 19:03:40 | None |
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Finished axonal delays saving/loading. | |||
| Revision 1.62 | tangorn | 2008-06-05 18:28:43 | None |
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Debugging axonal delays loading/saving | |||
| Revision 1.61 | tangorn | 2007-11-30 12:28:23 | None |
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Adaptation for new weights and delays, unstable | |||
| Revision 1.60 | tangorn | 2007-11-08 16:01:14 | None |
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Axonal delays are almost added, only file loading remains. Requires update of SANNDRA | |||
| Revision 1.59 | tangorn | 2007-11-08 12:31:00 | None |
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Fixed couple of bugs in 1.3 NeuroML parser, continue to work on new weights and delays, still broken... | |||
| Revision 1.58 | tangorn | 2007-09-06 10:18:40 | None |
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New handling of weights and axonal delays, THIS IS UNFINISHED | |||
| Revision 1.57 | tangorn | 2007-08-29 17:02:00 | None |
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Seems like it is ubuntu that is wrong, not the code` | |||
| Revision 1.56 | tangorn | 2007-08-29 15:06:06 | None |
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Some ubuntu with gcc-4.1.2 fixes | |||
| Revision 1.55 | tangorn | 2007-08-15 19:23:59 | None |
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Fixed a bug in xml parsing of branched neurons, courtesy of Jasmin Leveille | |||
| Revision 1.54 | tangorn | 2007-08-10 09:57:26 | None |
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Rough draft of branching dendrites added, thus version number updated to 0.3.4 | |||
| Revision 1.53 | tangorn | 2006-03-18 20:36:35 | None |
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ompiles with gcc-4.0.2 now | |||
| Revision 1.52 | tangorn | 2005-12-20 21:39:46 | None |
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Fixed one to one adressing | |||
| Revision 1.51 | tangorn | 2005-12-20 19:59:04 | None |
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Opps, wrong file was committed in previous committ. Gap junctions are good. | |||
| Revision 1.50 | tangorn | 2005-12-20 19:52:27 | None |
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Fixed crash on switch from scaled to relative. Synapses seem fine, gap junctions seem shifted towards origin | |||
| Revision 1.49 | tangorn | 2005-12-20 18:03:26 | None |
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Almost finished scaled addressing. Might sometimes crash in populations with many links from sources of different sizes | |||
| Revision 1.48 | tangorn | 2005-12-16 13:45:10 | None |
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Fixed the crash, but 3->5 still does not scale properly | |||
| Revision 1.47 | tangorn | 2005-12-16 09:44:24 | None |
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Unstable version using full functionality of scaled addressing | |||
| Revision 1.46 | tangorn | 2005-12-10 15:59:22 | None |
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Fixed wrong assignment of masks in border effects for wrap/expand | |||
| Revision 1.45 | tangorn | 2005-11-30 17:12:21 | None |
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Made the third option for offset: absolute, relative, and scaled. | |||
| Revision 1.44 | tangorn | 2005-11-22 07:50:24 | None |
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Preparing fo kernel families in address scaling; Fixed bug that overwrote network file after Network->New menu selection | |||
| Revision 1.43 | tangorn | 2005-09-30 08:24:56 | None |
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Changed code to compile with gcc-3.4.4. Partially implemented new address scaling functionality | |||
| Revision 1.42 | tangorn | 2005-08-30 11:33:05 | None |
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Oops, restoring lost changes | |||
| Revision 1.41 | tangorn | 2005-08-30 11:14:32 | None |
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Adding scaled adressing | |||
| Revision 1.40 | tangorn | 2005-08-29 14:07:50 | None |
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Following the int sizes in SANNDRA | |||
| Revision 1.39 | tangorn | 2005-08-25 17:19:51 | None |
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Update of the user manual, still incomplete; New input protocol editor, still buggy if used with navigation environment, should be fine with generic | |||
| Revision 1.38 | tangorn | 2005-03-09 18:45:15 | None |
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Corrected random axonal delays | |||
| Revision 1.37 | tangorn | 2005-03-08 16:00:19 | None |
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Changed the sizes of SANNDRA integer parameters | |||
| Revision 1.36 | tangorn | 2005-03-08 09:10:19 | None |
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New synapses are now fully ready for testing | |||
| Revision 1.35 | tangorn | 2005-03-06 07:00:26 | None |
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Added interface and parsing to handle depleteable transmitters (unfinished) and connection-specific axonal delays. Testing in progress. | |||
| Revision 1.34 | tangorn | 2005-01-16 11:30:38 | None |
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Introduced input protocols | |||
| Revision 1.33 | tangorn | 2004-09-22 06:26:47 | None |
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Depotentiation window length is a working parameter setting now | |||
| Revision 1.32 | tangorn | 2004-09-21 10:30:22 | None |
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Better interface to handle new learning rules. Interface allows to set basic weight (the one that will be approached with learning if no correlation is present) and maximal weight now. Initial weights are calculated as following: a) If the connection is flat (one-to-one or all-to-one) the starting weight is set to the basic weight. b) If the connection is Gaussian, the weights are calculated as before, using maximal weight for the peak of the Gaussian. Instructions for loading old networks: until you open the network/population editor and click save - nothing changes in the behavior of your old network. If you open the editor, you will see that old weights are now maximal weights, while new basic weights are set to 0.5 of maximal. That means, all your Gaussian projections are good to go as they are, but for every flat projection the starting weight is half of what it was. Manual correction is the solution. | |||
| Revision 1.31 | tangorn | 2004-09-20 18:35:16 | None |
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Handles new learning rules (well, almost, I suspect new ksim.cpp might be needed, but it has too much untested junk in it tonight) | |||
| Revision 1.30 | tangorn | 2004-06-09 14:32:37 | None |
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Adjusted the interface to new learning rules. | |||
| Revision 1.29 | tangorn | 2004-05-28 16:42:19 | None |
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Finalized new NeuroML tags parsing, backward compatible, can read old, new, or mixed format; saves in new. Stable. | |||
| Revision 1.28 | tangorn | 2004-05-26 15:40:47 | None |
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Added direct injected current (type "injection"); redid the interface for input voltage (type "input") with backward compatibility check in the network editor. Requires to open and save your old networks by the editor before running. "AHP" dependency is now called "AHP/ADP", also should be backward compatible. Fixed sliders in the SANNDRA preference page. Extended the ranges for time constants up to 300/500 ms. Added a comment editor to the network editor, do not use it yet though, I need to make it NeuroML compliant first. Fixed the compartmental dimensions, note that interface still uses mm as units, but NeuroML description now uses cm, so old networks should be manually corrected. | |||
| Revision 1.27 | tangorn | 2004-04-26 17:06:18 | None |
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Added interface and parsing for the fourth input channel; Fixed a number of interface bugs. | |||
| Revision 1.26 | tangorn | 2004-04-20 06:20:09 | None |
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Corresponds to UNSTABLE SANNDRA commit. | |||
| Revision 1.25 | tangorn | 2004-04-18 19:45:34 | None |
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SANNDRA API slightly changed, corresponding fixes. | |||
| Revision 1.24 | tangorn | 2004-03-21 13:58:47 | None |
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Added parsing of the default compartmental leakage | |||
| Revision 1.23 | tangorn | 2004-03-20 19:17:24 | None |
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Fixed setting proper compartment names for gap junctions when adding new compartment. Fixed parsing of leakage reverse potential. Fixed parsing of NMDA. | |||
| Revision 1.22 | tangorn | 2004-03-12 16:06:08 | None |
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Corrections for the new SANNDRA API | |||
| Revision 1.21 | tangorn | 2004-03-09 17:52:53 | None |
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Fixed renaming the populations (so that they appear on the source combo when the editor kicks in for missing source); Added most of gap junctions code; still missing: adding new sources to list when the compartment is added or cloning is used, All-to-one kernels causes crash. | |||
| Revision 1.20 | tangorn | 2004-02-26 07:13:53 | None |
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Fixed: leakage current; default voltages in voltage gated channel parsing; conductance ranges; labels for m/tau description of voltage dependency. Added: explicit representation for compartmental dimensions | |||
| Revision 1.19 | tangorn | 2004-02-09 20:29:23 | None |
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Fixing the spike generation; Partial interface for gap junctions; All voltage gated channels now should have V0 relative to Vrest, the default channels are fixed accordingly. | |||
| Revision 1.18 | tangorn | 2004-01-29 10:15:05 | None |
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More critical bugfixes | |||
| Revision 1.17 | tangorn | 2004-01-29 00:59:25 | None |
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New way of handling progress bar | |||
| Revision 1.16 | tangorn | 2004-01-28 19:47:21 | None |
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Long live valgrind. Bugfixes. | |||
| Revision 1.15 | tangorn | 2004-01-10 19:31:33 | None |
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Updated copyright information, also added Id tags to files changed in 2004 | |||
| Revision 1.14 | tangorn | 2004-01-03 13:39:37 | None |
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Fixed disabling run if new environment created without a rat; added setting the reduced equation to generate APs | |||
| Revision 1.13 | tangorn | 2003-12-29 04:21:48 | None |
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Minor fixes of the graphics; fixed session management bug on KDE restore; set threshold in learning rule to threshold in reduced equation. | |||
| Revision 1.12 | tangorn | 2003-12-18 12:43:43 | None |
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Added a bit of session management; Fixed wrong starting path in weight save/load dialog; Fixed statusbar not showing temporary messages. | |||
| Revision 1.11 | tangorn | 2003-11-17 12:48:59 | None |
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Fixed minor bug in gating interface; expanded border handling to three types: extend - no input from outside of the environment, wrap - input from (n+1)-th pixel is equal to input from 1st pixel, expand - input from (n+1)-th pixel is equal to input from n-th pixel. | |||
| Revision 1.10 | tangorn | 2003-11-02 11:59:55 | None |
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Removed manipulating speed hack in kmaze, animal moves normally as before hack; Added decay rate settings widgets in editor and use of decay rates in simulation | |||
| Revision 1.9 | tangorn | 2003-10-31 07:13:36 | None |
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Minor fix in setting the passive decay rate for learning; Started adding placefield/synaptic strength display. | |||
| Revision 1.8 | tangorn | 2003-10-26 11:00:03 | None |
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Separated KInput<T> and children into a file; Minor bugfixes in handling leakage and voltage block gates; Reworked the projection source settings and made possible to use fan input currents. | |||
| Revision 1.7 | tangorn | 2003-10-21 05:40:08 | None |
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Fixed little bug with voltage block handling | |||
| Revision 1.6 | tangorn | 2003-10-10 00:48:13 | None |
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Minor gate counting bug fixed | |||
| Revision 1.5 | tangorn | 2003-09-21 11:41:56 | None |
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Set the progress bar to show progress during simulation run, currently only works if Autoupdate is on and network controls behavior | |||
| Revision 1.4 | tangorn | 2003-08-28 16:44:07 | None |
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Reworked the reduced channel interface, now leakage is included and parameters are set by setting the threshold voltage and membrane constant; fixed layout management in chemical channels; fixed suffixes in conductance widget; fixed disabling the run on population editor cancellation. | |||
| Revision 1.3 | tangorn | 2003-07-28 12:23:17 | None |
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Updated documentation; Changed status bar operation; Added progress bar; Weights are not any longer reloaded on reset if the network or environment changed; Populations are no longer recreated if edited; Error messages updated for more understandability; Switched leakage to inverted gate in standard channel; Changed leakage conductance units to pS; Changed item correction editor to load specific page with error; Added weight bounds and reduced learning rate 10 times; Set default salience to 100; Changed gate pages to static to speed up editor loading; Made network description static; Updated default channel and neuron files. | |||
| Revision 1.2 | tangorn | 2003-07-18 10:57:30 | None |
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Converted network editor to tree form, made all widgets for currents unified. Fixed the proper timing of reward disappearance. Other minor fixes. | |||
| Revision 1.1 | tangorn | 2003-03-23 23:22:15 | None |
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Initial revision | |||
| Revision 1.1.1.1 | tangorn | 2003-03-23 23:22:15 | None |
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Resurrection of CVS server for KInNeSS | |||
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Filename: kunit.h | |||
| Revision 1.9 | tangorn | 2008-06-10 06:04:48 | None |
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Generating and parsing synaptic weights: New style almost complete. Remaining issue - one-to-one projections are not working properly | |||
| Revision 1.8 | tangorn | 2008-06-05 18:28:43 | None |
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Debugging axonal delays loading/saving | |||
| Revision 1.7 | tangorn | 2007-11-09 10:10:34 | None |
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Fixed e-mail | |||
| Revision 1.6 | tangorn | 2005-12-20 21:39:46 | None |
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Fixed one to one adressing | |||
| Revision 1.5 | tangorn | 2005-12-20 19:52:27 | None |
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Fixed crash on switch from scaled to relative. Synapses seem fine, gap junctions seem shifted towards origin | |||
| Revision 1.4 | tangorn | 2005-12-20 18:03:26 | None |
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Almost finished scaled addressing. Might sometimes crash in populations with many links from sources of different sizes | |||
| Revision 1.3 | tangorn | 2005-09-30 08:24:56 | None |
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Changed code to compile with gcc-3.4.4. Partially implemented new address scaling functionality | |||
| Revision 1.2 | tangorn | 2005-08-30 11:14:32 | None |
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Adding scaled adressing | |||
| Revision 1.1 | tangorn | 2005-03-08 09:10:19 | None |
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New synapses are now fully ready for testing | |||
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Filename: ndisplay.cpp | |||
| Revision 1.15 | tangorn | 2005-02-03 18:34:59 | None |
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Fix for new automake warning, fix for 64 bit arch, some debug output added | |||
| Revision 1.14 | tangorn | 2004-12-30 18:14:42 | None |
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This brings together all types of data visualisation that exist up to date: based on the same classes they exibit similar behaviors like scaling, saving, switching between color and grayscale pallette etc. | |||
| Revision 1.13 | tangorn | 2004-12-28 14:07:47 | None |
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Added the basic shell for CSD, LFP and PF displays, currently disabled | |||
| Revision 1.12 | tangorn | 2004-12-26 15:24:23 | None |
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Converted population display to a child of image plotter. Fixed minor bugs in CSD and place field displays. | |||
| Revision 1.11 | tangorn | 2004-12-23 14:36:28 | None |
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Partial fix for the population window sizing. It is initially proportional to the population size and tries to keep the height to width ratio while being resized. Currently messes up the layout if the width is either too large (buttons slide out of view) or too small (button text is obscured). | |||
| Revision 1.10 | tangorn | 2004-10-19 10:05:26 | None |
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As my priceless user poited out the backward compatibility fix was not complete in yesterday commit. Here is the fix of the fix :) | |||
| Revision 1.9 | tangorn | 2004-10-18 07:47:43 | None |
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This should fix compillation problem for Qt < 3.3 and KDE < 3.2; Also added our specific mime type for NeuroML (*.nml), can load both old (*.xml) and new extensions, saves as new ones... | |||
| Revision 1.8 | tangorn | 2004-10-09 03:32:56 | None |
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Made random reward restocking an option. This lifts the warning set in Oct 1st commit, all new features are now configurable instead of hardcoded. Also added grayscale display option for population activity display and ability to save the picture of activity at any moment | |||
| Revision 1.7 | tangorn | 2004-10-05 20:03:09 | None |
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Added DEPDIRS to cvsignores; Changed trajectory file output to only write when the coordinate changes; Rewrote place field display for new optimized input, it also handles old full input; Replaced deprecated repaintNoErase with noAutoErase; Supposedly fixed progress bar for small network loading. | |||
| Revision 1.6 | tangorn | 2004-04-05 11:11:42 | None |
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First take on place field display | |||
| Revision 1.5 | tangorn | 2004-01-29 10:15:05 | None |
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More critical bugfixes | |||
| Revision 1.4 | tangorn | 2004-01-28 19:47:21 | None |
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Long live valgrind. Bugfixes. | |||
| Revision 1.3 | tangorn | 2003-10-31 07:13:36 | None |
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Minor fix in setting the passive decay rate for learning; Started adding placefield/synaptic strength display. | |||
| Revision 1.2 | tangorn | 2003-09-08 11:51:31 | None |
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Adjusted the display color coding for the new reduced equation | |||
| Revision 1.1 | tangorn | 2003-03-23 23:22:15 | None |
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Initial revision | |||
| Revision 1.1.1.1 | tangorn | 2003-03-23 23:22:15 | None |
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Resurrection of CVS server for KInNeSS | |||
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Filename: ndisplay.h | |||
| Revision 1.10 | tangorn | 2007-11-09 10:10:34 | None |
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Fixed e-mail | |||
| Revision 1.9 | tangorn | 2004-12-30 18:14:42 | None |
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This brings together all types of data visualisation that exist up to date: based on the same classes they exibit similar behaviors like scaling, saving, switching between color and grayscale pallette etc. | |||
| Revision 1.8 | tangorn | 2004-12-26 15:24:23 | None |
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Converted population display to a child of image plotter. Fixed minor bugs in CSD and place field displays. | |||
| Revision 1.7 | tangorn | 2004-12-23 14:36:28 | None |
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Partial fix for the population window sizing. It is initially proportional to the population size and tries to keep the height to width ratio while being resized. Currently messes up the layout if the width is either too large (buttons slide out of view) or too small (button text is obscured). | |||
| Revision 1.6 | tangorn | 2004-10-09 03:32:56 | None |
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Made random reward restocking an option. This lifts the warning set in Oct 1st commit, all new features are now configurable instead of hardcoded. Also added grayscale display option for population activity display and ability to save the picture of activity at any moment | |||
| Revision 1.5 | tangorn | 2004-04-05 11:11:42 | None |
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First take on place field display | |||
| Revision 1.4 | tangorn | 2004-01-29 10:15:05 | None |
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More critical bugfixes | |||
| Revision 1.3 | tangorn | 2004-01-28 19:47:21 | None |
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Long live valgrind. Bugfixes. | |||
| Revision 1.2 | tangorn | 2003-10-31 07:13:36 | None |
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Minor fix in setting the passive decay rate for learning; Started adding placefield/synaptic strength display. | |||
| Revision 1.1 | tangorn | 2003-03-23 23:22:15 | None |
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Initial revision | |||
| Revision 1.1.1.1 | tangorn | 2003-03-23 23:22:15 | None |
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Resurrection of CVS server for KInNeSS | |||