--- kinness/neteditor ---


Filename: .cvsignore
Revision 1.2tangorn 2004-10-05 20:03:09None
Added DEPDIRS to cvsignores; Changed trajectory file output to only
write when the coordinate changes; Rewrote place field display for new
optimized input, it also handles old full input; Replaced deprecated
repaintNoErase with noAutoErase; Supposedly fixed progress bar for small
network loading.
Revision 1.1tangorn 2003-03-23 23:22:16None
Initial revision
Revision 1.1.1.1tangorn 2003-03-23 23:22:16None
Resurrection of CVS server for KInNeSS

Filename: Makefile.am
Revision 1.6tangorn 2008-06-05 12:43:34None
Interface for weights and axonal delays modified for better handling of external files
Revision 1.5tangorn 2004-01-11 04:54:36None
Added the shell for generic project environment with mutiple inputs that vary
through time
Revision 1.4tangorn 2003-08-28 16:44:07None
Reworked the reduced channel interface, now leakage is included and parameters
are set by setting the threshold voltage and membrane constant; fixed layout
management in chemical channels; fixed suffixes in conductance widget; fixed
disabling the run on population editor cancellation.
Revision 1.3tangorn 2003-07-28 13:32:08None
Some rearrangements of code and adding new network editor files
Revision 1.2tangorn 2003-07-28 12:23:17None
Updated documentation; Changed status bar operation; Added progress bar;
Weights are not any longer reloaded on reset if the network or environment
changed; Populations are no longer recreated if edited; Error messages
updated for more understandability; Switched leakage to inverted gate in
standard channel; Changed leakage conductance units to pS; Changed item
correction editor to load specific page with error; Added weight bounds and
reduced learning rate 10 times; Set default salience to 100; Changed
gate pages to static to speed up editor loading; Made network description
static; Updated default channel and neuron files.
Revision 1.1tangorn 2003-03-23 23:22:16None
Initial revision
Revision 1.1.1.1tangorn 2003-03-23 23:22:16None
Resurrection of CVS server for KInNeSS

Filename: channels.xml
Revision 1.9tangorn 2004-06-03 17:34:28None
Default channels and neurons updated to new format. Manual corrected.
Revision 1.8tangorn 2004-02-26 17:19:19None
Once again fixed the rounding of conductances by the editor
Revision 1.7tangorn 2004-02-09 20:29:23None
Fixing the spike generation; Partial interface for gap junctions; All voltage
gated channels now should have V0 relative to Vrest, the default channels
are fixed accordingly.
Revision 1.6tangorn 2004-01-04 21:35:56None
New defaults
Revision 1.5tangorn 2004-01-02 17:14:25None
Minor interface fixes; fixed wrong formula in original HH sodium channel
Revision 1.4tangorn 2003-12-30 14:28:43None
Added interface and parsing for m/tau voltage dependence and the interface
for setting taus in Ca++ channels; two default Ca++ channels added
Revision 1.3tangorn 2003-09-16 09:44:42None
Added interface and handling of voltage-dependent block (i.e. Mg block in NMDA)
Revision 1.2tangorn 2003-07-28 12:23:17None
Updated documentation; Changed status bar operation; Added progress bar;
Weights are not any longer reloaded on reset if the network or environment
changed; Populations are no longer recreated if edited; Error messages
updated for more understandability; Switched leakage to inverted gate in
standard channel; Changed leakage conductance units to pS; Changed item
correction editor to load specific page with error; Added weight bounds and
reduced learning rate 10 times; Set default salience to 100; Changed
gate pages to static to speed up editor loading; Made network description
static; Updated default channel and neuron files.
Revision 1.1tangorn 2003-03-23 23:22:16None
Initial revision
Revision 1.1.1.1tangorn 2003-03-23 23:22:16None
Resurrection of CVS server for KInNeSS

Filename: gating.cpp
Revision 1.10tangorn 2007-11-09 10:19:54None
Added enabling of Save weights/delays button, no function yet. Fixed e-mail
Revision 1.9tangorn 2004-05-29 12:03:56None
Finalized the user manual; fixed minor backward compatibility issue for
modulation and AHP/ADP parsing
Revision 1.8tangorn 2004-01-10 19:31:33None
Updated copyright information, also added Id tags to files changed in 2004
Revision 1.7tangorn 2004-01-02 17:14:25None
Minor interface fixes; fixed wrong formula in original HH sodium channel
Revision 1.6tangorn 2003-12-30 14:28:43None
Added interface and parsing for m/tau voltage dependence and the interface
for setting taus in Ca++ channels; two default Ca++ channels added
Revision 1.5tangorn 2003-12-29 04:21:48None
Minor fixes of the graphics; fixed session management bug on KDE restore;
set threshold in learning rule to threshold in reduced equation.
Revision 1.4tangorn 2003-09-16 11:49:40None
Corrected the limits for Mg concentration
Revision 1.3tangorn 2003-09-16 09:44:42None
Added interface and handling of voltage-dependent block (i.e. Mg block in NMDA)
Revision 1.2tangorn 2003-07-18 10:57:30None
Converted network editor to tree form, made all widgets for currents
unified. Fixed the proper timing of reward disappearance. Other minor
fixes.
Revision 1.1tangorn 2003-03-23 23:22:16None
Initial revision
Revision 1.1.1.1tangorn 2003-03-23 23:22:16None
Resurrection of CVS server for KInNeSS

Filename: gating.h
Revision 1.5tangorn 2007-11-09 10:19:54None
Added enabling of Save weights/delays button, no function yet. Fixed e-mail
Revision 1.4tangorn 2004-01-10 19:31:33None
Updated copyright information, also added Id tags to files changed in 2004
Revision 1.3tangorn 2003-12-30 14:28:43None
Added interface and parsing for m/tau voltage dependence and the interface
for setting taus in Ca++ channels; two default Ca++ channels added
Revision 1.2tangorn 2003-09-16 09:44:42None
Added interface and handling of voltage-dependent block (i.e. Mg block in NMDA)
Revision 1.1tangorn 2003-03-23 23:22:17None
Initial revision
Revision 1.1.1.1tangorn 2003-03-23 23:22:17None
Resurrection of CVS server for KInNeSS

Filename: kchannel.cpp
Revision 1.24tangorn 2007-08-10 09:57:26None
Rough draft of branching dendrites added, thus version number updated to 0.3.4
Revision 1.23tangorn 2004-06-27 12:12:05None
Aside from adding metainfo for gap junctions fixed a bug in new channel
creation
Revision 1.22tangorn 2004-06-03 07:23:19None
Set some default values to more appropriate
Revision 1.21tangorn 2004-05-29 12:03:56None
Finalized the user manual; fixed minor backward compatibility issue for
modulation and AHP/ADP parsing
Revision 1.20tangorn 2004-05-28 16:42:19None
Finalized new NeuroML tags parsing, backward compatible, can read old, new,
or mixed format; saves in new. Stable.
Revision 1.19tangorn 2004-05-27 17:08:04None
Lots of NeuroML comlpliance stuff, still not working at full functionality.
Revision 1.18tangorn 2004-05-26 15:40:47None
Added direct injected current (type "injection"); redid the interface for
input voltage (type "input") with backward compatibility check in the network
editor. Requires to open and save your old networks by the editor before running.
"AHP" dependency is now called "AHP/ADP", also should be backward compatible.
Fixed sliders in the SANNDRA preference page. Extended the ranges for
time constants up to 300/500 ms. Added a comment editor to the network editor,
do not use it yet though, I need to make it NeuroML compliant first. Fixed
the compartmental dimensions, note that interface still uses mm as units, but NeuroML
description now uses cm, so old networks should be manually corrected.
Revision 1.17tangorn 2004-03-11 14:18:23None
More fixes in handling default neurons, the set is updated to new voltage
gated channels.
Revision 1.16tangorn 2004-02-26 17:19:19None
Once again fixed the rounding of conductances by the editor
Revision 1.15tangorn 2004-02-26 13:48:39None
Fixed the population list update and caption update during population renaming.
Revision 1.14tangorn 2004-02-26 07:13:53None
Fixed: leakage current; default voltages in voltage gated channel parsing;
conductance ranges; labels for m/tau description of voltage dependency.
Added: explicit representation for compartmental dimensions
Revision 1.13tangorn 2004-02-09 20:29:23None
Fixing the spike generation; Partial interface for gap junctions; All voltage
gated channels now should have V0 relative to Vrest, the default channels
are fixed accordingly.
Revision 1.12tangorn 2004-01-10 19:31:33None
Updated copyright information, also added Id tags to files changed in 2004
Revision 1.11tangorn 2004-01-09 16:31:11None
Fixed handling of the default neurons and channels
Revision 1.10tangorn 2004-01-02 17:14:25None
Minor interface fixes; fixed wrong formula in original HH sodium channel
Revision 1.9tangorn 2003-12-30 14:28:43None
Added interface and parsing for m/tau voltage dependence and the interface
for setting taus in Ca++ channels; two default Ca++ channels added
Revision 1.8tangorn 2003-10-26 11:00:03None
Separated KInput<T> and children into a file; Minor bugfixes in handling
leakage and voltage block gates; Reworked the projection source settings
and made possible to use fan input currents.
Revision 1.7tangorn 2003-09-16 09:44:42None
Added interface and handling of voltage-dependent block (i.e. Mg block in NMDA)
Revision 1.6tangorn 2003-09-09 16:40:17None
Fixed saving the settings in all gates
Revision 1.5tangorn 2003-08-28 16:44:07None
Reworked the reduced channel interface, now leakage is included and parameters
are set by setting the threshold voltage and membrane constant; fixed layout
management in chemical channels; fixed suffixes in conductance widget; fixed
disabling the run on population editor cancellation.
Revision 1.4tangorn 2003-08-20 10:53:02None
Changed "display" tag to "monitor" for readability; fixed the step size of
g_bar widget; fixed resistance->conductance transform for gap junctions.
Revision 1.3tangorn 2003-07-28 12:23:17None
Updated documentation; Changed status bar operation; Added progress bar;
Weights are not any longer reloaded on reset if the network or environment
changed; Populations are no longer recreated if edited; Error messages
updated for more understandability; Switched leakage to inverted gate in
standard channel; Changed leakage conductance units to pS; Changed item
correction editor to load specific page with error; Added weight bounds and
reduced learning rate 10 times; Set default salience to 100; Changed
gate pages to static to speed up editor loading; Made network description
static; Updated default channel and neuron files.
Revision 1.2tangorn 2003-07-18 10:57:30None
Converted network editor to tree form, made all widgets for currents
unified. Fixed the proper timing of reward disappearance. Other minor
fixes.
Revision 1.1tangorn 2003-03-23 23:22:17None
Initial revision
Revision 1.1.1.1tangorn 2003-03-23 23:22:17None
Resurrection of CVS server for KInNeSS

Filename: kchannel.h
Revision 1.19tangorn 2007-11-09 10:19:54None
Added enabling of Save weights/delays button, no function yet. Fixed e-mail
Revision 1.18tangorn 2005-09-30 08:24:56None
Changed code to compile with gcc-3.4.4. Partially implemented new address
scaling functionality
Revision 1.17tangorn 2004-05-27 17:08:04None
Lots of NeuroML comlpliance stuff, still not working at full functionality.
Revision 1.16tangorn 2004-05-26 15:40:47None
Added direct injected current (type "injection"); redid the interface for
input voltage (type "input") with backward compatibility check in the network
editor. Requires to open and save your old networks by the editor before running.
"AHP" dependency is now called "AHP/ADP", also should be backward compatible.
Fixed sliders in the SANNDRA preference page. Extended the ranges for
time constants up to 300/500 ms. Added a comment editor to the network editor,
do not use it yet though, I need to make it NeuroML compliant first. Fixed
the compartmental dimensions, note that interface still uses mm as units, but NeuroML
description now uses cm, so old networks should be manually corrected.
Revision 1.15tangorn 2004-04-26 17:06:18None
Added interface and parsing for the fourth input channel; Fixed a number
of interface bugs.
Revision 1.14tangorn 2004-03-09 17:52:53None
Fixed renaming the populations (so that they appear on the source combo
when the editor kicks in for missing source); Added most of gap junctions
code; still missing: adding new sources to list when the compartment is
added or cloning is used, All-to-one kernels causes crash.
Revision 1.13tangorn 2004-02-26 17:19:19None
Once again fixed the rounding of conductances by the editor
Revision 1.12tangorn 2004-02-26 07:13:53None
Fixed: leakage current; default voltages in voltage gated channel parsing;
conductance ranges; labels for m/tau description of voltage dependency.
Added: explicit representation for compartmental dimensions
Revision 1.11tangorn 2004-02-09 20:29:23None
Fixing the spike generation; Partial interface for gap junctions; All voltage
gated channels now should have V0 relative to Vrest, the default channels
are fixed accordingly.
Revision 1.10tangorn 2004-01-10 19:31:33None
Updated copyright information, also added Id tags to files changed in 2004
Revision 1.9tangorn 2004-01-09 16:31:11None
Fixed handling of the default neurons and channels
Revision 1.8tangorn 2003-12-30 14:28:43None
Added interface and parsing for m/tau voltage dependence and the interface
for setting taus in Ca++ channels; two default Ca++ channels added
Revision 1.7tangorn 2003-10-26 11:00:03None
Separated KInput<T> and children into a file; Minor bugfixes in handling
leakage and voltage block gates; Reworked the projection source settings
and made possible to use fan input currents.
Revision 1.6tangorn 2003-09-16 09:44:42None
Added interface and handling of voltage-dependent block (i.e. Mg block in NMDA)
Revision 1.5tangorn 2003-09-09 16:40:17None
Fixed saving the settings in all gates
Revision 1.4tangorn 2003-08-28 16:44:07None
Reworked the reduced channel interface, now leakage is included and parameters
are set by setting the threshold voltage and membrane constant; fixed layout
management in chemical channels; fixed suffixes in conductance widget; fixed
disabling the run on population editor cancellation.
Revision 1.3tangorn 2003-07-28 12:23:17None
Updated documentation; Changed status bar operation; Added progress bar;
Weights are not any longer reloaded on reset if the network or environment
changed; Populations are no longer recreated if edited; Error messages
updated for more understandability; Switched leakage to inverted gate in
standard channel; Changed leakage conductance units to pS; Changed item
correction editor to load specific page with error; Added weight bounds and
reduced learning rate 10 times; Set default salience to 100; Changed
gate pages to static to speed up editor loading; Made network description
static; Updated default channel and neuron files.
Revision 1.2tangorn 2003-07-18 10:57:30None
Converted network editor to tree form, made all widgets for currents
unified. Fixed the proper timing of reward disappearance. Other minor
fixes.
Revision 1.1tangorn 2003-03-23 23:22:17None
Initial revision
Revision 1.1.1.1tangorn 2003-03-23 23:22:17None
Resurrection of CVS server for KInNeSS

Filename: kchemchannel.cpp
Revision 1.18tangorn 2008-09-18 14:11:33None
Fixed incorrect XML generation for modulated QIAF current
Revision 1.17tangorn 2007-11-09 10:19:54None
Added enabling of Save weights/delays button, no function yet. Fixed e-mail
Revision 1.16tangorn 2007-11-08 12:31:00None
Fixed couple of bugs in 1.3 NeuroML parser, continue to work on new weights
and delays, still broken...
Revision 1.15tangorn 2004-09-21 10:31:25None
Cleaning
Revision 1.14tangorn 2004-06-27 12:12:05None
Aside from adding metainfo for gap junctions fixed a bug in new channel
creation
Revision 1.13tangorn 2004-05-28 16:42:19None
Finalized new NeuroML tags parsing, backward compatible, can read old, new,
or mixed format; saves in new. Stable.
Revision 1.12tangorn 2004-05-27 17:08:04None
Lots of NeuroML comlpliance stuff, still not working at full functionality.
Revision 1.11tangorn 2004-05-26 15:40:47None
Added direct injected current (type "injection"); redid the interface for
input voltage (type "input") with backward compatibility check in the network
editor. Requires to open and save your old networks by the editor before running.
"AHP" dependency is now called "AHP/ADP", also should be backward compatible.
Fixed sliders in the SANNDRA preference page. Extended the ranges for
time constants up to 300/500 ms. Added a comment editor to the network editor,
do not use it yet though, I need to make it NeuroML compliant first. Fixed
the compartmental dimensions, note that interface still uses mm as units, but NeuroML
description now uses cm, so old networks should be manually corrected.
Revision 1.10tangorn 2004-05-10 13:10:09None
More of the manual plus minor interface fix.
Revision 1.9tangorn 2004-04-26 17:06:18None
Added interface and parsing for the fourth input channel; Fixed a number
of interface bugs.
Revision 1.8tangorn 2004-02-26 07:13:53None
Fixed: leakage current; default voltages in voltage gated channel parsing;
conductance ranges; labels for m/tau description of voltage dependency.
Added: explicit representation for compartmental dimensions
Revision 1.7tangorn 2004-01-20 15:49:02None
Minor interface fixes
Revision 1.6tangorn 2003-09-29 12:25:56None
Minor fix of neuromodulation of spiking threshold in reduced channel
Revision 1.5tangorn 2003-09-09 16:40:17None
Fixed saving the settings in all gates
Revision 1.4tangorn 2003-08-28 16:44:07None
Reworked the reduced channel interface, now leakage is included and parameters
are set by setting the threshold voltage and membrane constant; fixed layout
management in chemical channels; fixed suffixes in conductance widget; fixed
disabling the run on population editor cancellation.
Revision 1.3tangorn 2003-07-28 12:23:17None
Updated documentation; Changed status bar operation; Added progress bar;
Weights are not any longer reloaded on reset if the network or environment
changed; Populations are no longer recreated if edited; Error messages
updated for more understandability; Switched leakage to inverted gate in
standard channel; Changed leakage conductance units to pS; Changed item
correction editor to load specific page with error; Added weight bounds and
reduced learning rate 10 times; Set default salience to 100; Changed
gate pages to static to speed up editor loading; Made network description
static; Updated default channel and neuron files.
Revision 1.2tangorn 2003-07-18 10:57:30None
Converted network editor to tree form, made all widgets for currents
unified. Fixed the proper timing of reward disappearance. Other minor
fixes.
Revision 1.1tangorn 2003-03-23 23:22:17None
Initial revision
Revision 1.1.1.1tangorn 2003-03-23 23:22:17None
Resurrection of CVS server for KInNeSS

Filename: kclonesubnetdlg.cpp
Revision 1.10tangorn 2007-11-09 10:19:54None
Added enabling of Save weights/delays button, no function yet. Fixed e-mail
Revision 1.9tangorn 2007-08-29 15:06:06None
Some ubuntu with gcc-4.1.2 fixes
Revision 1.8tangorn 2007-08-15 19:23:59None
Fixed a bug in xml parsing of branched neurons, courtesy of Jasmin Leveille
Revision 1.7tangorn 2004-05-26 23:55:30None
More NeuroML compliance
Revision 1.6tangorn 2004-03-21 12:48:42None
Fixed cloning for gap junctions
Revision 1.5tangorn 2004-03-09 17:52:53None
Fixed renaming the populations (so that they appear on the source combo
when the editor kicks in for missing source); Added most of gap junctions
code; still missing: adding new sources to list when the compartment is
added or cloning is used, All-to-one kernels causes crash.
Revision 1.4tangorn 2003-07-28 13:32:08None
Some rearrangements of code and adding new network editor files
Revision 1.3tangorn 2003-07-28 12:23:17None
Updated documentation; Changed status bar operation; Added progress bar;
Weights are not any longer reloaded on reset if the network or environment
changed; Populations are no longer recreated if edited; Error messages
updated for more understandability; Switched leakage to inverted gate in
standard channel; Changed leakage conductance units to pS; Changed item
correction editor to load specific page with error; Added weight bounds and
reduced learning rate 10 times; Set default salience to 100; Changed
gate pages to static to speed up editor loading; Made network description
static; Updated default channel and neuron files.
Revision 1.2tangorn 2003-07-18 10:57:30None
Converted network editor to tree form, made all widgets for currents
unified. Fixed the proper timing of reward disappearance. Other minor
fixes.
Revision 1.1tangorn 2003-03-23 23:22:17None
Initial revision
Revision 1.1.1.1tangorn 2003-03-23 23:22:17None
Resurrection of CVS server for KInNeSS

Filename: kclonesubnetdlg.h
Revision 1.4tangorn 2007-11-09 10:19:54None
Added enabling of Save weights/delays button, no function yet. Fixed e-mail
Revision 1.3tangorn 2003-07-28 13:32:08None
Some rearrangements of code and adding new network editor files
Revision 1.2tangorn 2003-07-18 10:57:30None
Converted network editor to tree form, made all widgets for currents
unified. Fixed the proper timing of reward disappearance. Other minor
fixes.
Revision 1.1tangorn 2003-03-23 23:22:17None
Initial revision
Revision 1.1.1.1tangorn 2003-03-23 23:22:17None
Resurrection of CVS server for KInNeSS

Filename: keditdlgbase.cpp
Revision 1.7tangorn 2007-11-09 10:19:54None
Added enabling of Save weights/delays button, no function yet. Fixed e-mail
Revision 1.6tangorn 2005-04-02 12:31:03None
The editor is supposed to automagically open last edited page
Revision 1.5tangorn 2004-05-26 23:55:30None
More NeuroML compliance
Revision 1.4tangorn 2004-05-26 22:22:05None
Updated the top-level NeuroML hierarchy to match current examples on their
web site. Backward compatible with old format.
Revision 1.3tangorn 2004-05-26 15:40:47None
Added direct injected current (type "injection"); redid the interface for
input voltage (type "input") with backward compatibility check in the network
editor. Requires to open and save your old networks by the editor before running.
"AHP" dependency is now called "AHP/ADP", also should be backward compatible.
Fixed sliders in the SANNDRA preference page. Extended the ranges for
time constants up to 300/500 ms. Added a comment editor to the network editor,
do not use it yet though, I need to make it NeuroML compliant first. Fixed
the compartmental dimensions, note that interface still uses mm as units, but NeuroML
description now uses cm, so old networks should be manually corrected.
Revision 1.2tangorn 2004-01-28 19:47:21None
Long live valgrind. Bugfixes.
Revision 1.1tangorn 2003-07-28 13:32:08None
Some rearrangements of code and adding new network editor files

Filename: kinputunit.cpp
Revision 1.16tangorn 2007-11-09 10:19:54None
Added enabling of Save weights/delays button, no function yet. Fixed e-mail
Revision 1.15tangorn 2005-05-30 20:43:02None
Minor fix of the interface for the input current injection
Revision 1.14tangorn 2004-06-27 12:12:05None
Aside from adding metainfo for gap junctions fixed a bug in new channel
creation
Revision 1.13tangorn 2004-05-27 17:08:04None
Lots of NeuroML comlpliance stuff, still not working at full functionality.
Revision 1.12tangorn 2004-05-26 15:40:47None
Added direct injected current (type "injection"); redid the interface for
input voltage (type "input") with backward compatibility check in the network
editor. Requires to open and save your old networks by the editor before running.
"AHP" dependency is now called "AHP/ADP", also should be backward compatible.
Fixed sliders in the SANNDRA preference page. Extended the ranges for
time constants up to 300/500 ms. Added a comment editor to the network editor,
do not use it yet though, I need to make it NeuroML compliant first. Fixed
the compartmental dimensions, note that interface still uses mm as units, but NeuroML
description now uses cm, so old networks should be manually corrected.
Revision 1.11tangorn 2004-04-26 17:06:18None
Added interface and parsing for the fourth input channel; Fixed a number
of interface bugs.
Revision 1.10tangorn 2004-03-09 17:52:53None
Fixed renaming the populations (so that they appear on the source combo
when the editor kicks in for missing source); Added most of gap junctions
code; still missing: adding new sources to list when the compartment is
added or cloning is used, All-to-one kernels causes crash.
Revision 1.9tangorn 2004-02-26 17:19:19None
Once again fixed the rounding of conductances by the editor
Revision 1.8tangorn 2004-02-09 20:29:23None
Fixing the spike generation; Partial interface for gap junctions; All voltage
gated channels now should have V0 relative to Vrest, the default channels
are fixed accordingly.
Revision 1.7tangorn 2004-01-10 19:31:33None
Updated copyright information, also added Id tags to files changed in 2004
Revision 1.6tangorn 2004-01-02 17:14:25None
Minor interface fixes; fixed wrong formula in original HH sodium channel
Revision 1.5tangorn 2003-10-26 11:00:03None
Separated KInput<T> and children into a file; Minor bugfixes in handling
leakage and voltage block gates; Reworked the projection source settings
and made possible to use fan input currents.
Revision 1.4tangorn 2003-09-09 16:40:17None
Fixed saving the settings in all gates
Revision 1.3tangorn 2003-07-28 12:23:17None
Updated documentation; Changed status bar operation; Added progress bar;
Weights are not any longer reloaded on reset if the network or environment
changed; Populations are no longer recreated if edited; Error messages
updated for more understandability; Switched leakage to inverted gate in
standard channel; Changed leakage conductance units to pS; Changed item
correction editor to load specific page with error; Added weight bounds and
reduced learning rate 10 times; Set default salience to 100; Changed
gate pages to static to speed up editor loading; Made network description
static; Updated default channel and neuron files.
Revision 1.2tangorn 2003-07-18 10:57:30None
Converted network editor to tree form, made all widgets for currents
unified. Fixed the proper timing of reward disappearance. Other minor
fixes.
Revision 1.1tangorn 2003-03-23 23:22:17None
Initial revision
Revision 1.1.1.1tangorn 2003-03-23 23:22:17None
Resurrection of CVS server for KInNeSS

Filename: klayereditdlg.cpp
Revision 1.27tangorn 2007-11-30 12:28:23None
Adaptation for new weights and delays, unstable
Revision 1.26tangorn 2007-11-08 12:31:00None
Fixed couple of bugs in 1.3 NeuroML parser, continue to work on new weights
and delays, still broken...
Revision 1.25tangorn 2007-08-29 15:06:06None
Some ubuntu with gcc-4.1.2 fixes
Revision 1.24tangorn 2007-08-15 19:23:59None
Fixed a bug in xml parsing of branched neurons, courtesy of Jasmin Leveille
Revision 1.23tangorn 2007-08-10 09:57:26None
Rough draft of branching dendrites added, thus version number updated to 0.3.4
Revision 1.22tangorn 2005-12-16 09:44:24None
Unstable version using full functionality of scaled addressing
Revision 1.21tangorn 2005-04-02 12:31:03None
The editor is supposed to automagically open last edited page
Revision 1.20tangorn 2005-04-02 11:05:43None
Interface fixes: Properly sets recent files checkmark on restart;
Missing menu option Network->Create restored; Population size can be
scaled by integer factor from the size of environment
Revision 1.19tangorn 2004-06-27 12:12:05None
Aside from adding metainfo for gap junctions fixed a bug in new channel
creation
Revision 1.18tangorn 2004-05-28 16:42:19None
Finalized new NeuroML tags parsing, backward compatible, can read old, new,
or mixed format; saves in new. Stable.
Revision 1.17tangorn 2004-05-27 17:08:04None
Lots of NeuroML comlpliance stuff, still not working at full functionality.
Revision 1.16tangorn 2004-04-03 18:43:26None
Another fix of default neurons handling
Revision 1.15tangorn 2004-04-03 16:09:50None
Minor fix in handling default neurons
Revision 1.14tangorn 2004-03-20 17:29:24None
Changed the interface of compartment editor.
Revision 1.13tangorn 2004-03-11 14:18:23None
More fixes in handling default neurons, the set is updated to new voltage
gated channels.
Revision 1.12tangorn 2004-03-11 13:28:51None
Fixed bug in saving default neurons
Revision 1.11tangorn 2004-03-09 17:52:53None
Fixed renaming the populations (so that they appear on the source combo
when the editor kicks in for missing source); Added most of gap junctions
code; still missing: adding new sources to list when the compartment is
added or cloning is used, All-to-one kernels causes crash.
Revision 1.10tangorn 2004-02-26 13:48:39None
Fixed the population list update and caption update during population renaming.
Revision 1.9tangorn 2004-02-26 07:13:53None
Fixed: leakage current; default voltages in voltage gated channel parsing;
conductance ranges; labels for m/tau description of voltage dependency.
Added: explicit representation for compartmental dimensions
Revision 1.8tangorn 2004-01-29 21:48:53None
Couple editor bugs related to default elements are fixed
Revision 1.7tangorn 2004-01-10 19:31:33None
Updated copyright information, also added Id tags to files changed in 2004
Revision 1.6tangorn 2004-01-09 16:31:11None
Fixed handling of the default neurons and channels
Revision 1.5tangorn 2003-09-09 16:40:17None
Fixed saving the settings in all gates
Revision 1.4tangorn 2003-07-28 13:32:08None
Some rearrangements of code and adding new network editor files
Revision 1.3tangorn 2003-07-28 12:23:17None
Updated documentation; Changed status bar operation; Added progress bar;
Weights are not any longer reloaded on reset if the network or environment
changed; Populations are no longer recreated if edited; Error messages
updated for more understandability; Switched leakage to inverted gate in
standard channel; Changed leakage conductance units to pS; Changed item
correction editor to load specific page with error; Added weight bounds and
reduced learning rate 10 times; Set default salience to 100; Changed
gate pages to static to speed up editor loading; Made network description
static; Updated default channel and neuron files.
Revision 1.2tangorn 2003-07-18 10:57:30None
Converted network editor to tree form, made all widgets for currents
unified. Fixed the proper timing of reward disappearance. Other minor
fixes.
Revision 1.1tangorn 2003-03-23 23:22:17None
Initial revision
Revision 1.1.1.1tangorn 2003-03-23 23:22:17None
Resurrection of CVS server for KInNeSS

Filename: klayereditdlg.h
Revision 1.13tangorn 2007-11-30 12:28:23None
Adaptation for new weights and delays, unstable
Revision 1.12tangorn 2007-08-10 09:57:26None
Rough draft of branching dendrites added, thus version number updated to 0.3.4
Revision 1.11tangorn 2005-12-16 09:44:24None
Unstable version using full functionality of scaled addressing
Revision 1.10tangorn 2005-04-02 11:05:43None
Interface fixes: Properly sets recent files checkmark on restart;
Missing menu option Network->Create restored; Population size can be
scaled by integer factor from the size of environment
Revision 1.9tangorn 2004-05-27 17:08:04None
Lots of NeuroML comlpliance stuff, still not working at full functionality.
Revision 1.8tangorn 2004-05-27 09:04:16None
Unstable. Tracing a crash in the editor.
Revision 1.7tangorn 2004-05-26 15:40:47None
Added direct injected current (type "injection"); redid the interface for
input voltage (type "input") with backward compatibility check in the network
editor. Requires to open and save your old networks by the editor before running.
"AHP" dependency is now called "AHP/ADP", also should be backward compatible.
Fixed sliders in the SANNDRA preference page. Extended the ranges for
time constants up to 300/500 ms. Added a comment editor to the network editor,
do not use it yet though, I need to make it NeuroML compliant first. Fixed
the compartmental dimensions, note that interface still uses mm as units, but NeuroML
description now uses cm, so old networks should be manually corrected.
Revision 1.6tangorn 2004-02-26 13:48:39None
Fixed the population list update and caption update during population renaming.
Revision 1.5tangorn 2004-01-29 21:48:53None
Couple editor bugs related to default elements are fixed
Revision 1.4tangorn 2003-07-28 13:32:08None
Some rearrangements of code and adding new network editor files
Revision 1.3tangorn 2003-07-28 12:23:17None
Updated documentation; Changed status bar operation; Added progress bar;
Weights are not any longer reloaded on reset if the network or environment
changed; Populations are no longer recreated if edited; Error messages
updated for more understandability; Switched leakage to inverted gate in
standard channel; Changed leakage conductance units to pS; Changed item
correction editor to load specific page with error; Added weight bounds and
reduced learning rate 10 times; Set default salience to 100; Changed
gate pages to static to speed up editor loading; Made network description
static; Updated default channel and neuron files.
Revision 1.2tangorn 2003-07-18 10:57:30None
Converted network editor to tree form, made all widgets for currents
unified. Fixed the proper timing of reward disappearance. Other minor
fixes.
Revision 1.1tangorn 2003-03-23 23:22:17None
Initial revision
Revision 1.1.1.1tangorn 2003-03-23 23:22:17None
Resurrection of CVS server for KInNeSS

Filename: kneteditdlg.cpp
Revision 1.18tangorn 2007-08-10 09:57:26None
Rough draft of branching dendrites added, thus version number updated to 0.3.4
Revision 1.17tangorn 2005-03-22 16:55:31None
Fixed cloning
Revision 1.16tangorn 2004-05-28 16:42:19None
Finalized new NeuroML tags parsing, backward compatible, can read old, new,
or mixed format; saves in new. Stable.
Revision 1.15tangorn 2004-05-27 17:08:04None
Lots of NeuroML comlpliance stuff, still not working at full functionality.
Revision 1.14tangorn 2004-05-27 09:04:16None
Unstable. Tracing a crash in the editor.
Revision 1.13tangorn 2004-05-26 23:55:30None
More NeuroML compliance
Revision 1.12tangorn 2004-05-26 22:36:43None
And copyright too :)
Revision 1.11tangorn 2004-05-26 22:35:18None
Forgotten loading of the network description from previous commit
Revision 1.10tangorn 2004-05-26 22:22:05None
Updated the top-level NeuroML hierarchy to match current examples on their
web site. Backward compatible with old format.
Revision 1.9tangorn 2004-05-26 15:40:47None
Added direct injected current (type "injection"); redid the interface for
input voltage (type "input") with backward compatibility check in the network
editor. Requires to open and save your old networks by the editor before running.
"AHP" dependency is now called "AHP/ADP", also should be backward compatible.
Fixed sliders in the SANNDRA preference page. Extended the ranges for
time constants up to 300/500 ms. Added a comment editor to the network editor,
do not use it yet though, I need to make it NeuroML compliant first. Fixed
the compartmental dimensions, note that interface still uses mm as units, but NeuroML
description now uses cm, so old networks should be manually corrected.
Revision 1.8tangorn 2004-05-05 14:58:26None
Added the right-click handler in generic environment to show exact input
values
Revision 1.7tangorn 2004-03-20 19:17:24None
Fixed setting proper compartment names for gap junctions when adding new compartment.
Fixed parsing of leakage reverse potential. Fixed parsing of NMDA.
Revision 1.6tangorn 2004-03-09 17:52:53None
Fixed renaming the populations (so that they appear on the source combo
when the editor kicks in for missing source); Added most of gap junctions
code; still missing: adding new sources to list when the compartment is
added or cloning is used, All-to-one kernels causes crash.
Revision 1.5tangorn 2004-02-26 13:48:39None
Fixed the population list update and caption update during population renaming.
Revision 1.4tangorn 2004-01-28 19:47:21None
Long live valgrind. Bugfixes.
Revision 1.3tangorn 2003-07-28 12:23:17None
Updated documentation; Changed status bar operation; Added progress bar;
Weights are not any longer reloaded on reset if the network or environment
changed; Populations are no longer recreated if edited; Error messages
updated for more understandability; Switched leakage to inverted gate in
standard channel; Changed leakage conductance units to pS; Changed item
correction editor to load specific page with error; Added weight bounds and
reduced learning rate 10 times; Set default salience to 100; Changed
gate pages to static to speed up editor loading; Made network description
static; Updated default channel and neuron files.
Revision 1.2tangorn 2003-07-18 10:57:30None
Converted network editor to tree form, made all widgets for currents
unified. Fixed the proper timing of reward disappearance. Other minor
fixes.
Revision 1.1tangorn 2003-03-23 23:22:17None
Initial revision
Revision 1.1.1.1tangorn 2003-03-23 23:22:17None
Resurrection of CVS server for KInNeSS

Filename: kneteditdlg.h
Revision 1.9tangorn 2007-11-09 10:19:54None
Added enabling of Save weights/delays button, no function yet. Fixed e-mail
Revision 1.8tangorn 2004-05-27 17:08:04None
Lots of NeuroML comlpliance stuff, still not working at full functionality.
Revision 1.7tangorn 2004-05-27 09:04:16None
Unstable. Tracing a crash in the editor.
Revision 1.6tangorn 2004-05-26 23:55:30None
More NeuroML compliance
Revision 1.5tangorn 2004-05-26 22:22:05None
Updated the top-level NeuroML hierarchy to match current examples on their
web site. Backward compatible with old format.
Revision 1.4tangorn 2004-05-26 15:40:47None
Added direct injected current (type "injection"); redid the interface for
input voltage (type "input") with backward compatibility check in the network
editor. Requires to open and save your old networks by the editor before running.
"AHP" dependency is now called "AHP/ADP", also should be backward compatible.
Fixed sliders in the SANNDRA preference page. Extended the ranges for
time constants up to 300/500 ms. Added a comment editor to the network editor,
do not use it yet though, I need to make it NeuroML compliant first. Fixed
the compartmental dimensions, note that interface still uses mm as units, but NeuroML
description now uses cm, so old networks should be manually corrected.
Revision 1.3tangorn 2003-07-28 12:23:17None
Updated documentation; Changed status bar operation; Added progress bar;
Weights are not any longer reloaded on reset if the network or environment
changed; Populations are no longer recreated if edited; Error messages
updated for more understandability; Switched leakage to inverted gate in
standard channel; Changed leakage conductance units to pS; Changed item
correction editor to load specific page with error; Added weight bounds and
reduced learning rate 10 times; Set default salience to 100; Changed
gate pages to static to speed up editor loading; Made network description
static; Updated default channel and neuron files.
Revision 1.2tangorn 2003-07-18 10:57:30None
Converted network editor to tree form, made all widgets for currents
unified. Fixed the proper timing of reward disappearance. Other minor
fixes.
Revision 1.1tangorn 2003-03-23 23:22:17None
Initial revision
Revision 1.1.1.1tangorn 2003-03-23 23:22:17None
Resurrection of CVS server for KInNeSS

Filename: kompartment.cpp
Revision 1.19tangorn 2008-10-22 16:20:23None
Added interface and parsing for random injection current
Revision 1.18tangorn 2007-11-08 12:31:00None
Fixed couple of bugs in 1.3 NeuroML parser, continue to work on new weights
and delays, still broken...
Revision 1.17tangorn 2007-08-29 15:06:06None
Some ubuntu with gcc-4.1.2 fixes
Revision 1.16tangorn 2007-08-10 09:57:26None
Rough draft of branching dendrites added, thus version number updated to 0.3.4
Revision 1.15tangorn 2005-03-08 09:10:19None
New synapses are now fully ready for testing
Revision 1.14tangorn 2005-03-06 07:00:26None
Added interface and parsing to handle depleteable transmitters (unfinished)
and connection-specific axonal delays. Testing in progress.
Revision 1.13tangorn 2004-09-18 18:25:08None
Different way to plot place fields; separate check mark for spike and voltage
output
Revision 1.12tangorn 2004-06-03 07:23:19None
Set some default values to more appropriate
Revision 1.11tangorn 2004-05-26 15:40:47None
Added direct injected current (type "injection"); redid the interface for
input voltage (type "input") with backward compatibility check in the network
editor. Requires to open and save your old networks by the editor before running.
"AHP" dependency is now called "AHP/ADP", also should be backward compatible.
Fixed sliders in the SANNDRA preference page. Extended the ranges for
time constants up to 300/500 ms. Added a comment editor to the network editor,
do not use it yet though, I need to make it NeuroML compliant first. Fixed
the compartmental dimensions, note that interface still uses mm as units, but NeuroML
description now uses cm, so old networks should be manually corrected.
Revision 1.10tangorn 2004-04-28 11:02:58None
Added (untested) randomization of axonal delays
Revision 1.9tangorn 2004-03-30 19:56:20None
Adding the fourth input channel: generic part handles it in the input editor and
display; not enabled in the network editor yet. Maze part handles it as a direct
command to move the animal to a clicked destination, later it will be done through cell
activity. Changed: animal speed now is less dependent on the traveling distance to
destination. Fixed: If the speed is not measured yet (or is never measured), the
movement will be done slowly (as if you have 1GHz processor), but realistically.
Revision 1.8tangorn 2004-03-22 13:27:47None
Fixed the bug in setting axial resistance.
Revision 1.7tangorn 2004-03-20 17:29:24None
Changed the interface of compartment editor.
Revision 1.6tangorn 2004-02-26 07:13:53None
Fixed: leakage current; default voltages in voltage gated channel parsing;
conductance ranges; labels for m/tau description of voltage dependency.
Added: explicit representation for compartmental dimensions
Revision 1.5tangorn 2004-01-20 15:49:02None
Minor interface fixes
Revision 1.4tangorn 2003-08-20 10:53:02None
Changed "display" tag to "monitor" for readability; fixed the step size of
g_bar widget; fixed resistance->conductance transform for gap junctions.
Revision 1.3tangorn 2003-07-28 12:23:17None
Updated documentation; Changed status bar operation; Added progress bar;
Weights are not any longer reloaded on reset if the network or environment
changed; Populations are no longer recreated if edited; Error messages
updated for more understandability; Switched leakage to inverted gate in
standard channel; Changed leakage conductance units to pS; Changed item
correction editor to load specific page with error; Added weight bounds and
reduced learning rate 10 times; Set default salience to 100; Changed
gate pages to static to speed up editor loading; Made network description
static; Updated default channel and neuron files.
Revision 1.2tangorn 2003-07-18 10:57:30None
Converted network editor to tree form, made all widgets for currents
unified. Fixed the proper timing of reward disappearance. Other minor
fixes.
Revision 1.1tangorn 2003-03-23 23:22:17None
Initial revision
Revision 1.1.1.1tangorn 2003-03-23 23:22:17None
Resurrection of CVS server for KInNeSS

Filename: kompartment.h
Revision 1.10tangorn 2008-10-22 16:20:23None
Added interface and parsing for random injection current
Revision 1.9tangorn 2007-08-10 09:57:26None
Rough draft of branching dendrites added, thus version number updated to 0.3.4
Revision 1.8tangorn 2005-03-06 07:00:26None
Added interface and parsing to handle depleteable transmitters (unfinished)
and connection-specific axonal delays. Testing in progress.
Revision 1.7tangorn 2004-09-18 18:25:08None
Different way to plot place fields; separate check mark for spike and voltage
output
Revision 1.6tangorn 2004-04-28 11:02:58None
Added (untested) randomization of axonal delays
Revision 1.5tangorn 2004-03-20 17:29:24None
Changed the interface of compartment editor.
Revision 1.4tangorn 2004-02-26 07:13:53None
Fixed: leakage current; default voltages in voltage gated channel parsing;
conductance ranges; labels for m/tau description of voltage dependency.
Added: explicit representation for compartmental dimensions
Revision 1.3tangorn 2003-07-28 12:23:17None
Updated documentation; Changed status bar operation; Added progress bar;
Weights are not any longer reloaded on reset if the network or environment
changed; Populations are no longer recreated if edited; Error messages
updated for more understandability; Switched leakage to inverted gate in
standard channel; Changed leakage conductance units to pS; Changed item
correction editor to load specific page with error; Added weight bounds and
reduced learning rate 10 times; Set default salience to 100; Changed
gate pages to static to speed up editor loading; Made network description
static; Updated default channel and neuron files.
Revision 1.2tangorn 2003-07-18 10:57:30None
Converted network editor to tree form, made all widgets for currents
unified. Fixed the proper timing of reward disappearance. Other minor
fixes.
Revision 1.1tangorn 2003-03-23 23:22:17None
Initial revision
Revision 1.1.1.1tangorn 2003-03-23 23:22:17None
Resurrection of CVS server for KInNeSS

Filename: kprojection.cpp
Revision 1.26tangorn 2008-06-09 20:17:12None
Minor fixes of synaptic weight editor interface
Revision 1.25tangorn 2008-06-05 12:43:34None
Interface for weights and axonal delays modified for better handling of external files
Revision 1.24tangorn 2007-11-30 12:28:23None
Adaptation for new weights and delays, unstable
Revision 1.23tangorn 2007-11-09 10:19:54None
Added enabling of Save weights/delays button, no function yet. Fixed e-mail
Revision 1.22tangorn 2007-11-08 12:31:00None
Fixed couple of bugs in 1.3 NeuroML parser, continue to work on new weights
and delays, still broken...
Revision 1.21tangorn 2007-09-06 10:18:40None
New handling of weights and axonal delays, THIS IS UNFINISHED
Revision 1.20tangorn 2007-06-12 09:37:18None
Interface/NeuroML changes for loading axonal delays
Revision 1.19tangorn 2007-03-08 10:18:45None
Jasmin requested larger limits for axonal delays
Revision 1.18tangorn 2005-11-30 17:12:21None
Made the third option for offset: absolute, relative, and scaled.
Revision 1.17tangorn 2005-03-22 16:44:29None
Fixed label in learning rule setup
Revision 1.16tangorn 2005-03-07 16:55:21None
Fixed modulatory axonal delay
Revision 1.15tangorn 2005-03-06 07:00:26None
Added interface and parsing to handle depleteable transmitters (unfinished)
and connection-specific axonal delays. Testing in progress.
Revision 1.14tangorn 2004-09-22 09:47:28None
Fixes minor bug with randomized weights settings widget
Revision 1.13tangorn 2004-09-22 06:26:47None
Depotentiation window length is a working parameter setting now
Revision 1.12tangorn 2004-09-21 16:44:14None
Empty interface for randomizing initial weights
Revision 1.11tangorn 2004-09-21 10:30:23None
Better interface to handle new learning rules. Interface allows to set basic
weight (the one that will be approached with
learning if no correlation is present) and maximal weight now. Initial
weights are calculated as following:

a) If the connection is flat (one-to-one or all-to-one) the starting weight is
set to the basic weight.

b) If the connection is Gaussian, the weights are calculated as before, using
maximal weight for the peak of the Gaussian.

Instructions for loading old networks: until you open the network/population
editor and click save - nothing changes in the behavior of your old network.
If you open the editor, you will see that old weights are now maximal
weights, while new basic weights are set to 0.5 of maximal. That means, all
your Gaussian projections are good to go as they are, but for every flat
projection the starting weight is half of what it was. Manual correction is
the solution.
Revision 1.10tangorn 2004-09-20 18:35:16None
Handles new learning rules (well, almost, I suspect new ksim.cpp might
be needed, but it has too much untested junk in it tonight)
Revision 1.9tangorn 2004-06-27 12:12:05None
Aside from adding metainfo for gap junctions fixed a bug in new channel
creation
Revision 1.8tangorn 2004-06-09 14:32:37None
Adjusted the interface to new learning rules.
Revision 1.7tangorn 2004-06-09 13:28:17None
Fixed crash in saving new many-to-one projections
Revision 1.6tangorn 2004-02-26 07:13:53None
Fixed: leakage current; default voltages in voltage gated channel parsing;
conductance ranges; labels for m/tau description of voltage dependency.
Added: explicit representation for compartmental dimensions
Revision 1.5tangorn 2003-11-17 12:48:59None
Fixed minor bug in gating interface; expanded border handling to three types:
extend - no input from outside of the environment, wrap - input from (n+1)-th
pixel is equal to input from 1st pixel, expand - input from (n+1)-th pixel is
equal to input from n-th pixel.
Revision 1.4tangorn 2003-11-02 11:59:55None
Removed manipulating speed hack in kmaze, animal moves normally as before hack;
Added decay rate settings widgets in editor and use of decay rates in simulation
Revision 1.3tangorn 2003-10-26 11:00:03None
Separated KInput<T> and children into a file; Minor bugfixes in handling
leakage and voltage block gates; Reworked the projection source settings
and made possible to use fan input currents.
Revision 1.2tangorn 2003-09-20 15:57:32None
New fix for layout management in projection editor
Revision 1.1tangorn 2003-08-28 16:44:07None
Reworked the reduced channel interface, now leakage is included and parameters
are set by setting the threshold voltage and membrane constant; fixed layout
management in chemical channels; fixed suffixes in conductance widget; fixed
disabling the run on population editor cancellation.

Filename: kprojection.h
Revision 1.16tangorn 2008-06-09 20:17:12None
Minor fixes of synaptic weight editor interface
Revision 1.15tangorn 2008-06-05 12:43:34None
Interface for weights and axonal delays modified for better handling of external files
Revision 1.14tangorn 2007-11-09 10:19:54None
Added enabling of Save weights/delays button, no function yet. Fixed e-mail
Revision 1.13tangorn 2007-11-08 12:31:00None
Fixed couple of bugs in 1.3 NeuroML parser, continue to work on new weights
and delays, still broken...
Revision 1.12tangorn 2007-09-06 10:18:40None
New handling of weights and axonal delays, THIS IS UNFINISHED
Revision 1.11tangorn 2007-06-12 09:37:18None
Interface/NeuroML changes for loading axonal delays
Revision 1.10tangorn 2005-03-06 07:00:26None
Added interface and parsing to handle depleteable transmitters (unfinished)
and connection-specific axonal delays. Testing in progress.
Revision 1.9tangorn 2004-09-21 16:44:14None
Empty interface for randomizing initial weights
Revision 1.8tangorn 2004-09-21 10:30:23None
Better interface to handle new learning rules. Interface allows to set basic
weight (the one that will be approached with
learning if no correlation is present) and maximal weight now. Initial
weights are calculated as following:

a) If the connection is flat (one-to-one or all-to-one) the starting weight is
set to the basic weight.

b) If the connection is Gaussian, the weights are calculated as before, using
maximal weight for the peak of the Gaussian.

Instructions for loading old networks: until you open the network/population
editor and click save - nothing changes in the behavior of your old network.
If you open the editor, you will see that old weights are now maximal
weights, while new basic weights are set to 0.5 of maximal. That means, all
your Gaussian projections are good to go as they are, but for every flat
projection the starting weight is half of what it was. Manual correction is
the solution.
Revision 1.7tangorn 2004-06-09 14:32:37None
Adjusted the interface to new learning rules.
Revision 1.6tangorn 2004-02-26 13:48:39None
Fixed the population list update and caption update during population renaming.
Revision 1.5tangorn 2004-02-09 20:29:23None
Fixing the spike generation; Partial interface for gap junctions; All voltage
gated channels now should have V0 relative to Vrest, the default channels
are fixed accordingly.
Revision 1.4tangorn 2003-11-17 12:48:59None
Fixed minor bug in gating interface; expanded border handling to three types:
extend - no input from outside of the environment, wrap - input from (n+1)-th
pixel is equal to input from 1st pixel, expand - input from (n+1)-th pixel is
equal to input from n-th pixel.
Revision 1.3tangorn 2003-11-02 11:59:55None
Removed manipulating speed hack in kmaze, animal moves normally as before hack;
Added decay rate settings widgets in editor and use of decay rates in simulation
Revision 1.2tangorn 2003-10-26 11:00:03None
Separated KInput<T> and children into a file; Minor bugfixes in handling
leakage and voltage block gates; Reworked the projection source settings
and made possible to use fan input currents.
Revision 1.1tangorn 2003-08-28 16:44:07None
Reworked the reduced channel interface, now leakage is included and parameters
are set by setting the threshold voltage and membrane constant; fixed layout
management in chemical channels; fixed suffixes in conductance widget; fixed
disabling the run on population editor cancellation.

Filename: ktreelist.cpp
Revision 1.9tangorn 2007-08-29 15:06:06None
Some ubuntu with gcc-4.1.2 fixes
Revision 1.8tangorn 2007-08-10 09:57:26None
Rough draft of branching dendrites added, thus version number updated to 0.3.4
Revision 1.7tangorn 2005-04-07 19:19:38None
Fix for crash when editor tries to open non-existent page
Revision 1.6tangorn 2005-04-02 12:31:03None
The editor is supposed to automagically open last edited page
Revision 1.5tangorn 2004-04-03 18:43:26None
Another fix of default neurons handling
Revision 1.4tangorn 2004-03-20 17:29:24None
Changed the interface of compartment editor.
Revision 1.3tangorn 2004-02-26 13:48:39None
Fixed the population list update and caption update during population renaming.
Revision 1.2tangorn 2004-02-26 07:13:53None
Fixed: leakage current; default voltages in voltage gated channel parsing;
conductance ranges; labels for m/tau description of voltage dependency.
Added: explicit representation for compartmental dimensions
Revision 1.1tangorn 2003-07-28 13:32:08None
Some rearrangements of code and adding new network editor files

Filename: ktreelist.h
Revision 1.8tangorn 2005-09-30 08:24:56None
Changed code to compile with gcc-3.4.4. Partially implemented new address
scaling functionality
Revision 1.7tangorn 2005-04-02 12:31:03None
The editor is supposed to automagically open last edited page
Revision 1.6tangorn 2004-05-27 17:08:04None
Lots of NeuroML comlpliance stuff, still not working at full functionality.
Revision 1.5tangorn 2004-05-27 09:04:16None
Unstable. Tracing a crash in the editor.
Revision 1.4tangorn 2004-04-03 18:43:26None
Another fix of default neurons handling
Revision 1.3tangorn 2004-02-26 13:48:39None
Fixed the population list update and caption update during population renaming.
Revision 1.2tangorn 2004-02-26 07:13:53None
Fixed: leakage current; default voltages in voltage gated channel parsing;
conductance ranges; labels for m/tau description of voltage dependency.
Added: explicit representation for compartmental dimensions
Revision 1.1tangorn 2003-07-28 13:32:08None
Some rearrangements of code and adding new network editor files

Filename: kvoltchannel.cpp
Revision 1.13tangorn 2007-11-09 10:19:54None
Added enabling of Save weights/delays button, no function yet. Fixed e-mail
Revision 1.12tangorn 2004-06-27 12:12:05None
Aside from adding metainfo for gap junctions fixed a bug in new channel
creation
Revision 1.11tangorn 2004-05-27 17:08:04None
Lots of NeuroML comlpliance stuff, still not working at full functionality.
Revision 1.10tangorn 2004-05-06 16:03:57None
Fixed the reset. Added a lot of standard shortcuts and their descriptions
in the manual. Made the trajectory recording optional.
Revision 1.9tangorn 2004-02-26 07:13:53None
Fixed: leakage current; default voltages in voltage gated channel parsing;
conductance ranges; labels for m/tau description of voltage dependency.
Added: explicit representation for compartmental dimensions
Revision 1.8tangorn 2004-01-10 19:31:33None
Updated copyright information, also added Id tags to files changed in 2004
Revision 1.7tangorn 2004-01-09 16:31:11None
Fixed handling of the default neurons and channels
Revision 1.6tangorn 2003-12-30 14:28:43None
Added interface and parsing for m/tau voltage dependence and the interface
for setting taus in Ca++ channels; two default Ca++ channels added
Revision 1.5tangorn 2003-09-16 09:44:42None
Added interface and handling of voltage-dependent block (i.e. Mg block in NMDA)
Revision 1.4tangorn 2003-09-09 16:40:17None
Fixed saving the settings in all gates
Revision 1.3tangorn 2003-07-28 12:23:17None
Updated documentation; Changed status bar operation; Added progress bar;
Weights are not any longer reloaded on reset if the network or environment
changed; Populations are no longer recreated if edited; Error messages
updated for more understandability; Switched leakage to inverted gate in
standard channel; Changed leakage conductance units to pS; Changed item
correction editor to load specific page with error; Added weight bounds and
reduced learning rate 10 times; Set default salience to 100; Changed
gate pages to static to speed up editor loading; Made network description
static; Updated default channel and neuron files.
Revision 1.2tangorn 2003-07-18 10:57:30None
Converted network editor to tree form, made all widgets for currents
unified. Fixed the proper timing of reward disappearance. Other minor
fixes.
Revision 1.1tangorn 2003-03-23 23:22:17None
Initial revision
Revision 1.1.1.1tangorn 2003-03-23 23:22:17None
Resurrection of CVS server for KInNeSS

Filename: neteditfactory.cpp
Revision 1.2tangorn 2007-11-09 10:19:54None
Added enabling of Save weights/delays button, no function yet. Fixed e-mail
Revision 1.1tangorn 2003-03-23 23:22:17None
Initial revision
Revision 1.1.1.1tangorn 2003-03-23 23:22:17None
Resurrection of CVS server for KInNeSS

Filename: neteditor.cpp
Revision 1.31tangorn 2008-06-12 15:45:06None
Added <?xml version='1.0' ?> tag to beginning of all saved xml documents. KInNeSS does not use it, so old files are still valid.
Revision 1.30tangorn 2007-08-10 09:57:26None
Rough draft of branching dendrites added, thus version number updated to 0.3.4
Revision 1.29tangorn 2006-02-25 09:20:46None
Fixed a bug preventing checkmarks against last opened network/environment
in recent files lists
Revision 1.28tangorn 2005-11-22 07:50:24None
Preparing fo kernel families in address scaling; Fixed bug that overwrote
network file after Network->New menu selection
Revision 1.27tangorn 2005-08-25 17:19:51None
Update of the user manual, still incomplete; New input protocol editor,
still buggy if used with navigation environment, should be fine with
generic
Revision 1.26tangorn 2005-04-02 11:05:43None
Interface fixes: Properly sets recent files checkmark on restart;
Missing menu option Network->Create restored; Population size can be
scaled by integer factor from the size of environment
Revision 1.25tangorn 2005-03-06 07:00:26None
Added interface and parsing to handle depleteable transmitters (unfinished)
and connection-specific axonal delays. Testing in progress.
Revision 1.24tangorn 2004-12-25 12:22:59None
Reloading of the last open network on program restart. Currently made
unavoidable. I might set it as an option later.
Revision 1.23tangorn 2004-10-18 07:47:43None
This should fix compillation problem for Qt < 3.3 and KDE < 3.2; Also added
our specific mime type for NeuroML (*.nml), can load both old (*.xml) and new extensions,
saves as new ones...
Revision 1.22tangorn 2004-06-18 11:39:56None
Fixed crash during network save on exit
Revision 1.21tangorn 2004-06-07 21:14:13None
OK, KDE_VERSION gives a better match
Revision 1.20tangorn 2004-06-07 21:02:35None
Qt 3.2.0 was not enough to have KUser, so I changed condition to 3.2.2
Revision 1.19tangorn 2004-06-03 06:18:58None
Fix for population list filling in for old network format
Revision 1.18tangorn 2004-05-28 16:42:19None
Finalized new NeuroML tags parsing, backward compatible, can read old, new,
or mixed format; saves in new. Stable.
Revision 1.17tangorn 2004-05-26 23:55:30None
More NeuroML compliance
Revision 1.16tangorn 2004-05-26 22:22:05None
Updated the top-level NeuroML hierarchy to match current examples on their
web site. Backward compatible with old format.
Revision 1.15tangorn 2004-05-06 16:03:57None
Fixed the reset. Added a lot of standard shortcuts and their descriptions
in the manual. Made the trajectory recording optional.
Revision 1.14tangorn 2004-03-21 12:48:42None
Fixed cloning for gap junctions
Revision 1.13tangorn 2004-03-20 17:29:24None
Changed the interface of compartment editor.
Revision 1.12tangorn 2004-03-11 14:18:23None
More fixes in handling default neurons, the set is updated to new voltage
gated channels.
Revision 1.11tangorn 2004-03-09 19:00:26None
Backward compatibility for Qt 3.1 (no QStringList::gres())
Revision 1.10tangorn 2004-03-09 17:52:53None
Fixed renaming the populations (so that they appear on the source combo
when the editor kicks in for missing source); Added most of gap junctions
code; still missing: adding new sources to list when the compartment is
added or cloning is used, All-to-one kernels causes crash.
Revision 1.9tangorn 2004-02-26 13:48:39None
Fixed the population list update and caption update during population renaming.
Revision 1.8tangorn 2004-01-29 21:48:53None
Couple editor bugs related to default elements are fixed
Revision 1.7tangorn 2004-01-10 19:31:33None
Updated copyright information, also added Id tags to files changed in 2004
Revision 1.6tangorn 2004-01-09 16:31:11None
Fixed handling of the default neurons and channels
Revision 1.5tangorn 2003-12-18 12:43:43None
Added a bit of session management; Fixed wrong starting path in weight save/load
dialog; Fixed statusbar not showing temporary messages.
Revision 1.4tangorn 2003-09-21 13:26:10None
New version of status bar uses stack of messages, so several actions
can be performed and displayed correctly. Doxygen settings removed from CVS.
Revision 1.3tangorn 2003-07-28 12:23:17None
Updated documentation; Changed status bar operation; Added progress bar;
Weights are not any longer reloaded on reset if the network or environment
changed; Populations are no longer recreated if edited; Error messages
updated for more understandability; Switched leakage to inverted gate in
standard channel; Changed leakage conductance units to pS; Changed item
correction editor to load specific page with error; Added weight bounds and
reduced learning rate 10 times; Set default salience to 100; Changed
gate pages to static to speed up editor loading; Made network description
static; Updated default channel and neuron files.
Revision 1.2tangorn 2003-07-18 10:57:30None
Converted network editor to tree form, made all widgets for currents
unified. Fixed the proper timing of reward disappearance. Other minor
fixes.
Revision 1.1tangorn 2003-03-23 23:22:18None
Initial revision
Revision 1.1.1.1tangorn 2003-03-23 23:22:18None
Resurrection of CVS server for KInNeSS

Filename: neteditor.h
Revision 1.15tangorn 2008-09-18 14:11:33None
Fixed incorrect XML generation for modulated QIAF current
Revision 1.14tangorn 2007-11-09 10:19:54None
Added enabling of Save weights/delays button, no function yet. Fixed e-mail
Revision 1.13tangorn 2007-09-06 10:18:40None
New handling of weights and axonal delays, THIS IS UNFINISHED
Revision 1.12tangorn 2005-04-02 11:05:43None
Interface fixes: Properly sets recent files checkmark on restart;
Missing menu option Network->Create restored; Population size can be
scaled by integer factor from the size of environment
Revision 1.11tangorn 2004-12-25 12:22:59None
Reloading of the last open network on program restart. Currently made
unavoidable. I might set it as an option later.
Revision 1.10tangorn 2004-06-27 12:12:05None
Aside from adding metainfo for gap junctions fixed a bug in new channel
creation
Revision 1.9tangorn 2004-06-09 13:28:17None
Fixed crash in saving new many-to-one projections
Revision 1.8tangorn 2004-05-26 22:22:05None
Updated the top-level NeuroML hierarchy to match current examples on their
web site. Backward compatible with old format.
Revision 1.7tangorn 2004-03-09 17:52:53None
Fixed renaming the populations (so that they appear on the source combo
when the editor kicks in for missing source); Added most of gap junctions
code; still missing: adding new sources to list when the compartment is
added or cloning is used, All-to-one kernels causes crash.
Revision 1.6tangorn 2004-02-26 17:19:19None
Once again fixed the rounding of conductances by the editor
Revision 1.5tangorn 2004-02-26 13:48:39None
Fixed the population list update and caption update during population renaming.
Revision 1.4tangorn 2003-08-28 16:44:07None
Reworked the reduced channel interface, now leakage is included and parameters
are set by setting the threshold voltage and membrane constant; fixed layout
management in chemical channels; fixed suffixes in conductance widget; fixed
disabling the run on population editor cancellation.
Revision 1.3tangorn 2003-07-28 12:23:17None
Updated documentation; Changed status bar operation; Added progress bar;
Weights are not any longer reloaded on reset if the network or environment
changed; Populations are no longer recreated if edited; Error messages
updated for more understandability; Switched leakage to inverted gate in
standard channel; Changed leakage conductance units to pS; Changed item
correction editor to load specific page with error; Added weight bounds and
reduced learning rate 10 times; Set default salience to 100; Changed
gate pages to static to speed up editor loading; Made network description
static; Updated default channel and neuron files.
Revision 1.2tangorn 2003-07-18 10:57:30None
Converted network editor to tree form, made all widgets for currents
unified. Fixed the proper timing of reward disappearance. Other minor
fixes.
Revision 1.1tangorn 2003-03-23 23:22:18None
Initial revision
Revision 1.1.1.1tangorn 2003-03-23 23:22:18None
Resurrection of CVS server for KInNeSS

Filename: neteditor.rc
Revision 1.4tangorn 2005-04-02 11:05:43None
Interface fixes: Properly sets recent files checkmark on restart;
Missing menu option Network->Create restored; Population size can be
scaled by integer factor from the size of environment
Revision 1.3tangorn 2004-01-15 16:03:36None
Generic part is ready now for Max to start testing; Common code from it
and maze part moved to project part
Revision 1.2tangorn 2003-12-17 18:02:38None
Minor interface fixes
Revision 1.1tangorn 2003-03-23 23:22:18None
Initial revision
Revision 1.1.1.1tangorn 2003-03-23 23:22:18None
Resurrection of CVS server for KInNeSS

Filename: neurons.xml
Revision 1.7tangorn 2004-06-03 17:34:28None
Default channels and neurons updated to new format. Manual corrected.
Revision 1.6tangorn 2004-04-03 18:43:26None
Another fix of default neurons handling
Revision 1.5tangorn 2004-04-03 16:09:50None
Minor fix in handling default neurons
Revision 1.4tangorn 2004-03-11 14:18:23None
More fixes in handling default neurons, the set is updated to new voltage
gated channels.
Revision 1.3tangorn 2004-01-04 21:35:56None
New defaults
Revision 1.2tangorn 2003-07-28 12:23:17None
Updated documentation; Changed status bar operation; Added progress bar;
Weights are not any longer reloaded on reset if the network or environment
changed; Populations are no longer recreated if edited; Error messages
updated for more understandability; Switched leakage to inverted gate in
standard channel; Changed leakage conductance units to pS; Changed item
correction editor to load specific page with error; Added weight bounds and
reduced learning rate 10 times; Set default salience to 100; Changed
gate pages to static to speed up editor loading; Made network description
static; Updated default channel and neuron files.
Revision 1.1tangorn 2003-03-23 23:22:18None
Initial revision
Revision 1.1.1.1tangorn 2003-03-23 23:22:18None
Resurrection of CVS server for KInNeSS