The KInNeSS Handbook
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The KInNeSS Handbook

Anatoli Gorchetchnikov

Revision 0.3.5 (10/06/2008)

Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.1 or any later version published by the Free Software Foundation; with no Invariant Sections, with no Front-Cover Texts, and with no Back-Cover Texts. A copy of the license is included in the section entitled "GNU Free Documentation License".

KInNeSS is an integrated (in the sense that ideally you can do different projects, like visual system, auditory system or memory system within one framework) environment for running neurosimulations. It is designed so that adding new projects does not require rewriting KInNeSS itself.

Please report bugs in KInNeSS using Help->Report bug....


Table of Contents

1. Introduction
KInNeSS philosophy
Why do you want to use KInNeSS
How do you use KInNeSS
2. Using KInNeSS
Main Interface
File Menu
Settings Menu
Help Menu
Main Toolbar
Status Bar
Projects Menu and Toolbar
Navigation Project Environment
Creating new environment
Editing the environment
Generic Project
Creating new environment
Editing the environment
Vision Project
Network Manipulations with neteditor plugin
Network editor
Population editor
Soma editor
Dendrite editor
Ligand-gated current
Synaptic weights and axonal delays
Modulation of a current
Afterhyperpolarization/afterdepolarization (AHP/ADP) currents
Voltage-dependent current
Reduced fast voltage-dependent currents
Voltage block
Injected input current
Driven by voltage input current
Population cloning
Running simulations with brain plugin
Running the simulation
Watching the cell activity
Offline visualization
KInNeSS preferences
General preferences
Computation preferences
Simulation preferences
Navigation preferences
Generic preferences
3. Command Reference
Summary of KInNeSS shortcuts
4. Developer's Guide to KInNeSS
5. Credits and License
KInNeSS
Thanks to
Documentation
A. Installation
How to obtain KInNeSS
Requirements
Tarball instructions
CVS instructions
Compilation and installation
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